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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_2490_PI390587928Hv_44K_v2TGGATACACCTGAAGAGAGCGGAAGGGCTGATTATTTAGAGAACATCACCATAGCATCAG603GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_12555.324432e-241762 - 182110060 / 60minus ABC10883 ABC12036 ABC36804
MLOCMLOC_12555.226712e-241967 - 202610060 / 60minus ABC10883 ABC12036 ABC36804
MLOCMLOC_12555.125582e-241841 - 190010060 / 60minus ABC10883 ABC12036 ABC36804
JLOC1JLOC1_8428.124968e-25623 - 68210060 / 60plus
Harvest21ABC258876693e-25604 - 66310060 / 60plus
Harvest35U35_262706693e-25604 - 66310060 / 60plus



Contig Sequence (669 bp)

>U35_26270 669 Hv_44K_v2
GAGCTCACAAAATCTCCCCAACTCCCAACTCCTCCGCCCATCCAAATACCATAAACGCAC
TCCAACTCCTTCCTCCGCGGCCTAAAGTCCCAGTCTTTCCGCTAAATCCCGCTTATCCCC
CCGCCTTTCCTCGCCCGTACAGCCCCCAAGATCGATCCTTCCTCGAGGCCCAGTCGCCGG
TTTGGAGCATGAGGCTCCGATCCGCGCCGCCGGCGGCGCCGCGGCTGCTGCTGCTGCTGG
CCGTGCTACTGTGCGGCTTCTGCTGCTGCTGCGAGGGGAGATTCGTCGTGGAGAAGAACA
GCCTCAAGGTCACGGCGCCGGACTCCCTTAAGGGCAGCTACGAGTGCGCCATTGGCAACT
TCGGCGTGCCGCAGTACGGGGGCACCATGGTCGGCGTCGTCGCCTATCCTAAGGCCAACA
GGAAGGCCTGCAAGAGCTTTGACGACTTCGACATCTCCTACAAGGCCAAGCCCGGGTCCC
TGCCCACCTTCTTGCTAGTCGACCGGGGAGATTGCTTCTTCACTAAGAAGGCATGGAACG
CTCAGAACGCCGGAGTGGCGGCTATCCTTGTTGCTGATGACAAGGATGAGCCTCTAATTA
CAATGGATACACCTGAAGAGAGCGGAAGGGCTGATTATTTAGAGAACATCACCATAGCAT
CAGCGCTGA



Homology of Contig U35_26270 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os11g02464.17286e-86protein|vacuolar-sorting receptor precursor, putative, expressed
Brachypodium v1_2Bradi4g44380.16248e-84
Arabidopsis v10AT3G52850.16233e-65| Symbols: VSR1, BP-80, ATELP, BP80, BP80B, ATELP1, ATVSR1, GFS1, VSR1;1, BP80-1;1 | vacuolar sorting receptor homolog 1 | chr3:19587999-19591690 FORWARD LENGTH=623