barSeed - Barley Seed Development Database

Probe CUST_24857_PI390587928

Source Contig U35_31090

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24857_PI390587928	Hv_44K_v2	ACAGCGATTCATGTAATAATGCCGAAACATTCAGATACATGATGTGCACGTATTTAAGAG	486	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38341.1	266	2e-24	133 - 192	100	60 / 60	plus	ABC31234
JLOC1	JLOC1_24923.1	1733	8e-25	1508 - 1567	100	60 / 60	plus
Harvest21	ABC31234	558	3e-25	487 - 546	100	60 / 60	plus	ABC31234
Harvest35	U35_31090	558	3e-25	487 - 546	100	60 / 60	plus

Contig Sequence (558 bp)

>U35_31090 558 Hv_44K_v2
GCCACATGTCAACCAAATATACATACACGAGGGATCTTTGGTCCGCCTTGAAGAACTTCG
GATTAGAAACCTGGCCGAACTGCGGGACACCCCTGCCGGCCTGGAACATCTGAAGTCACT
CAAAGGGGTGCGGTTTCTTGACATGCATCCTGATTTTGAAAAGAACTTTCCAGTGGCAAA
ACTAGAGCATGTCCCGAAAGTTCGCTGCACCATACGATACGAAGAGGAGTGAGTCTTTCT
TGCGTGGATGGGGTTTGCAATTATCGCCATCAATGTGGGAGCTATGTACGTGGAATGGCG
ATTTTTATGACGCAACTTTCATTCTTGTTTCTTTTATCGATCTCTGCTTATATTTAGGAA
CGGAGGGAGTAATAAAGTATGGGAAAGATGTGTATTACTGCTATCCCATCTTTTTTTATA
TTATTATCTAAGTTTATTTATAGTTGCACTAAGCTACCGCATGGGACAACTATTATGTAT
TTCTACACAGCGATTCATGTAATAATGCCGAAACATTCAGATACATGATGTGCACGTATT
TAAGAGAAAAAAAAAAAA

Homology of Contig U35_31090 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None