barSeed - Barley Seed Development Database

Probe CUST_24830_PI390587928

Source Contig U35_5930

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24830_PI390587928	Hv_44K_v2	GCGAATGCGCCTATTCACATGGTTACAGCAGAAACAGGTCAATTTAAGGATCAGCTTTGG	701	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250178.1	2694	2e-24	711 - 770	100	60 / 60	plus	ABC06621 ABC30604
MLOC	MLOC_72104.2	1853	2e-24	402 - 461	100	60 / 60	plus	ABC06621 ABC30604
MLOC	MLOC_72104.3	1768	2e-24	196 - 255	100	60 / 60	plus	ABC06621 ABC30604
MLOC	MLOC_72104.1	2137	2e-24	564 - 623	100	60 / 60	plus	ABC06621 ABC30604
JLOC1	JLOC1_47964.1	2074	8e-25	501 - 560	100	60 / 60	plus
Harvest21	ABC12598	830	3e-25	702 - 761	100	60 / 60	plus
Harvest35	U35_5930	830	3e-25	702 - 761	100	60 / 60	plus

Contig Sequence (830 bp)

>U35_5930 830 Hv_44K_v2
TGACGTGGGCTATTTCCTCGCGCCGCTTCCTCCCGCCCGCCGCGGCATACCACGACGCAG
CTGAATCTTTCGCCTCCGCGGCGCCGTCCCTCTCAGCCTCGCGTTAGCACTAGTCCGTTC
CTATGTACCTCTACTACAACCCAATCTAATCCAATCCTTCCGCGTTTCTGCTTGCTTGGA
ACTCGGGATCTCGTCGGGAGAGGCGGCGGCGGATTTGGGATTTGGGGGCCATGGCGTGGC
GGCGCGTCCTCTCCCAGGCTGCAAGGAACCAATCAGCATATGCAATCTATAATGAGTTGG
CAGCCTCCTCTCCTCTGAGGTTACTTAGAAGTGACATCAGTGCAGGTGGTGCACTCAGGA
ACTTACATGAGAGGTATCATTCGAGCTATTTTGGTGGCCTTTCACGCAGCATGCGAGACC
TGGGCTCCCAAAGTGAAGCTTCTATGCTAAAAGAGATATACAGAAGTGACCCAGAGCGTG
TGATAAAAATATTTGAAAGCCAGCCTTTGTTGCGTTCGAATCCTTCAGCACTATCTGAAT
ATGTAAAAGCTCTTGTAAAGGTTGATAGGTTGGATGATAGCACCTTGCTAAAAACATTGC
AAAGAGGTCTTGCTGCTTCAGAAAGGGCAGAAGGAAGCCTTGGTAGCGTGCCGGCATTAA
AGAGTGCTGGTCAAGTGACAAAAGATGGAATTATTGGCACTGCGAATGCGCCTATTCACA
TGGTTACAGCAGAAACAGGTCAATTTAAGGATCAGCTTTGGCGCACCTTCCGAAGCATTG
CACTGACTTTCCTTTTAATTTCGGGCATCGGGGCTCTCATTGAGGATAGA

Homology of Contig U35_5930 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g39260.1	716	9e-92	protein\|OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed
Brachypodium v1_2	Bradi2g41610.1	705	8e-107
Arabidopsis v10	AT2G26140.1	717	6e-51	\| Symbols: ftsh4 \| FTSH protease 4 \| chr2:11131939-11135126 REVERSE LENGTH=717