barSeed - Barley Seed Development Database

Probe CUST_24828_PI390587928

Source Contig U35_43081

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24828_PI390587928	Hv_44K_v2	ATAGAACCCACGACCACGAGCTGCCGAATTGATCAAACAACGCCAACGCGTGCATGCAGC	236	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363948	1909	2e-24	608 - 667	100	60 / 60	plus	ABC09757
Harvest21	ABC39290	604	3e-25	237 - 296	100	60 / 60	plus
Harvest35	U35_43081	604	3e-25	237 - 296	100	60 / 60	plus

Contig Sequence (604 bp)

>U35_43081 604 Hv_44K_v2
GGATGGAGCACGGCGAGCAGGAGCAGCACGCCATGGAGCTGCCGCCGGGCTTCCGCTTCC
ACCCGACCGACGAGGAGCTCATCACGCACTACCTGGCCAAGAAGGTGGCCGACGCCCGCT
TCGCCGCCCTCGCCGTCTCCGTCGCCGACCTCAACAAGTGCGAGCCCTGGGACCTGCCAG
GTAAGCTAGCAACACTTCTGCAGTTCATGCACCAACCTGTGTGACCGATCGCTGCGATAG
AACCCACGACCACGAGCTGCCGAATTGATCAAACAACGCCAACGCGTGCATGCAGCGCTG
GCTAGGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCTCAAGGACCGCAAGTACCCGACG
GGGTTGAGGACGAACAGGGCGACGGAGTCCGGCTACTGGAAGGCCACCGGCAAGGACAAG
GACATCTTGAGGGGCAAGGCCCTCGTCGGCATGAAGAAGACGCTCGTCTTCTACACCGGG
AGGGCGCCCAAGGGCGAGAAGTCCGGCTGGGTCATGCACGAGTACCGNCTCAACGCCAAG
CTCCACGCCGCCAGCACCAGCCGNGGTTCCCTCCCCGGCAGCAGGCCCGCGTCGTCCTCG
TCGT

Homology of Contig U35_43081 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g38720.1	344	2e-68	protein\|no apical meristem protein, putative, expressed
Brachypodium v1_2	Bradi5g12407.1	333	5e-65
Arabidopsis v10	AT5G61430.1	336	1e-57	\| Symbols: ANAC100, ATNAC5, NAC100 \| NAC domain containing protein 100 \| chr5:24701328-24702553 REVERSE LENGTH=336