barSeed - Barley Seed Development Database

Probe CUST_24820_PI390587928

Source Contig U35_43085

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24820_PI390587928	Hv_44K_v2	GCAGAGATTGTCAATATCAATGTGACATTGGTAGATGATGTAGGGGTCCTTGACGTGGTG	497	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.826	1.310	1.026	0.720	0.757	0.449
Raw	27.907	28.124	21.338	19.276	7.699	4.389

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32627.1	2785	2e-24	604 - 663	100	60 / 60	plus	ABC19513
JLOC1	JLOC1_21247.1	2648	8e-25	595 - 654	100	60 / 60	plus
Harvest21	ABC39301	604	3e-25	498 - 557	100	60 / 60	plus
Harvest35	U35_43085	604	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (604 bp)

>U35_43085 604 Hv_44K_v2
GGGAAAGCAAAAGAGAAGAGGTTAGAGGTGCCACCGACGCACACAATCATATGCAAGAAT
CTCAAGTCGTCAATTGTGTCGCTCCAGATGATTTTGCGCACTGTCCACAAAATTCTGTTG
GTCATGGTGCTTCTCCGATTTTGAGGCGAGATGACTCTGATGCAGAAATGGAAGGCAAAA
TAGAAGAGATTGGAGGAGCTACCGAGGCACACAATCAGAAGATCCAAGAATCTCAAGTTG
TCGATGTTATTGTTCAAGATGGTTTTGCAGGAGGCCAACACGGCCACAATAATCCACGAA
ATGATGTTTCAAACGACTCGCCAATACATGGTTTTTCGGAGCAGATGAATGATAGAAGAC
TATTACGTGAAAGGAAGCGCGCACCGCTAGTAGTAGGGAACGCTGAGATTAGAAGCAAAC
ACAAAGTATGCTTGCATGAAGGCACTCCAAGGACTCAATCGGGAGGCCCTCTTAATATGA
AGAGAAAGGGCAAGAGTGCAGAGATTGTCAATATCAATGTGACATTGGTAGATGATGTAG
GGGTCCTTGACGTGGTGCGCTCGGCATCCAAGTGTGGAGACCATGTTGGGACCGATCAAA
TTGA

Homology of Contig U35_43085 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None