barSeed - Barley Seed Development Database

Probe CUST_24807_PI390587928

Source Contig U35_5943

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24807_PI390587928	Hv_44K_v2	CTCTCCGGCGGAAAACCGCGTGATTAAATTAATATGCTATTGTATTTCATATTATTGGTT	843	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359078	1674	2e-24	1508 - 1567	100	60 / 60	plus	ABC11709 ABC14081 ABC37155
MLOC	MLOC_75409.1	280	2e-24	189 - 248	100	60 / 60	minus	None
Harvest35	U35_5943	954	3e-25	844 - 903	100	60 / 60	plus

Contig Sequence (954 bp)

>U35_5943 954 Hv_44K_v2
TTCATCTGGTCGACGGACCCCGACGAGTACATGGCCCACTTCGCCCTCCACGTGACGGAG
CGGCTGGCGGAGGCGGACGCCGCCATCTTCAACACATTGGAAGAGCTCGAGCCGGCGGCG
CTGGACGCGATGCGCGCCATGCTCCCGCCCACCGTGCCCGTCTACACCATCGGCTATCTC
CCCTTACTCGCCGAGGAGATCGTGCCACAGGGCGGACCGGTGGACACGCTGGGCTCAAAC
CTGTGGAAGGAGGACGTCTCCTGCTTCAACTTTCTGGACGGCAAGGAGCCCCGGTCGGTC
GTGTACGTGAACTACGGGAGCATCACGGTGATGAGCAACGAGGAGCTCCTCGAGTTTGCG
TGGGGGCTAGCCAACAGCGGCCAGTCCTTCCTGTGGATCATCAGGCCAGACCTCGTCAAG
GGCGACGTCGCCGTGCTGCCGCCGGAGTTCCTGGAGTCCATCGAGGGGCGCGGCGTGCTG
GCGAGCTGGTGCCCGCAGGAGGCAGTGCTGAGGCACGAGGCAGTAGGCGTGTTCCTGACG
CACTCAGGGTGGAACTCGACGGTGGACAGCCTGTGCGGCGGGGTGCCGACGCTGTGCTGG
CCCTTCTTCGCGGAGCAGCAGACCAACAGCCGGTACAGCTGCGTGGAGTGGGGCGTGGCC
ATGGAGATCGGTCAGGACGTGCGGCGGGAGACGGTGGAGGCCAAGATACGGGAGGCGATG
TCCGGCGAGAAGGGGAAGGAGATGCGCCGCCGGGCCGAGGAGTGGAGGGAGACCGGCGTC
CGCGCGACGCGGCCCGGCGGGCGCTCGCGCGCCAATCTCGAGAGGCTGGTCGCCGACTCC
CTCCTCTCCGGCGGAAAACCGCGTGATTAAATTAATATGCTATTGTATTTCATATTATTG
GTTATTAACTTATTATTAGGACAAGATCTAGATTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5943 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g37820.1	492	6e-169	protein\|cytokinin-O-glucosyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi5g11950.1	492	1e-172
Arabidopsis v10	AT1G22400.1	489	1e-100	\| Symbols: UGT85A1, ATUGT85A1 \| UDP-Glycosyltransferase superfamily protein \| chr1:7903851-7906607 REVERSE LENGTH=489