barSeed - Barley Seed Development Database

Probe CUST_24758_PI390587928

Source Contig U35_8514

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24758_PI390587928	Hv_44K_v2	AAGTTGCAGCAGCTTTCAAAGGTGGACATGTCTGGCAACCTGATATCCGGGGAGGTGCCG	256	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60733.3	2858	2e-24	842 - 901	100	60 / 60	plus	ABC10767
MLOC	MLOC_60733.1	3638	2e-24	1616 - 1675	100	60 / 60	plus	ABC10767
MLOC	MLOC_60733.2	3370	2e-24	1616 - 1675	100	60 / 60	plus	ABC10767
JLOC1	JLOC1_39630.2	3498	8e-25	1497 - 1556	100	60 / 60	plus
JLOC1	JLOC1_39630.1	3360	8e-25	1612 - 1671	100	60 / 60	plus
Harvest21	ABC18312	868	3e-25	257 - 316	100	60 / 60	plus
Harvest35	U35_8514	868	3e-25	257 - 316	100	60 / 60	plus

Contig Sequence (868 bp)

>U35_8514 868 Hv_44K_v2
GAATTATCTCAATGGGACGATTCCGGCCAAGCTGTTCACGTTGCAGAACCTGACACAGGT
AGAGCTGCACAACAATTTGCTGTCCGGCGGGCTCCGGCTGGACGCCGACGAGGTGTCGCC
ATCGATAGGGGAGCTGAGCCTGTATAACAACCGATTATCTGGCCCGGTGCCGGCGGGGAT
CGGTGGGCTCGTTGGGCTGCAGAAGCTTCTGTTGGCCGACAACAAGTTGTCCGGCGAACT
CCCGCCGGCTATTGGGAAGTTGCAGCAGCTTTCAAAGGTGGACATGTCTGGCAACCTGAT
ATCCGGGGAGGTGCCGCCGGCGATCGCAGGTTGCAGGCTGCTCACCTTCCTCGACCTATC
CGGCAACAAGCTCTCCGGCAGCATCCCGGCAGCGCTCGCCAGCCTACGGATCCTCAACTA
CCTCAACCTATCCAGCAACGCGCTCGACGGGGAGATCCCGCCTTCCATCGCCGGAATGCA
GAGCCTAACAGCCGTCGATTTCTCGTACAACCGCCTGTCCGGCGAGGTCCCAGCCACCGG
CCAGTTCGCCTACTTCAACTCCACCTCCTTCGCCGGCAACCCTGGTCTCTGCGGGGCCAT
CCTGTCTCCGTGTGGCAGCCACGGCGTGGCCACGTCCACCATCGGGTCCCTCTCCTCGAC
CACGAAGCTTCTCCTCGTGCTCGGCCTCCTGGCGCTGTCCATCATCTTCGCCGTGGCAGC
CGTGCTGAAGGCGCGGTCTCTGAAGCGGTCGGCGGAGGCGCGTGCGTGGCGGATCACGGC
GTTCCAGCGCCTGGACTTCGCCGTGGACGACGTGCTGGACTGCCTCAAGGACGAGAACGT
GATCGGCAAGGGCGGNTCCGGGATCGTG

Homology of Contig U35_8514 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g12730.1	1008	1e-149	protein\|receptor protein kinase CLAVATA1 precursor, putative, expressed
Brachypodium v1_2	Bradi1g69097.1	1003	9e-153
Arabidopsis v10	AT3G49670.1	1002	1e-100	\| Symbols: BAM2 \| Leucine-rich receptor-like protein kinase family protein \| chr3:18417741-18420836 FORWARD LENGTH=1002