barSeed - Barley Seed Development Database

Probe CUST_24754_PI390587928

Source Contig U35_8518

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24754_PI390587928	Hv_44K_v2	AGCGTTCTTGGGCTGGCTGCTTTTCTTTACTTTTCACAAGTGTAATCCACAAGAAGAAGG	988	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361798	2188	7e-23	1603 - 1663	98	60 / 61	plus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_1137.4	1845	7e-23	1373 - 1433	98	60 / 61	plus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_1137.3	2330	7e-23	484 - 544	98	60 / 61	minus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_1137.1	2292	7e-23	505 - 565	98	60 / 61	minus	ABC20479 ABC21055 ABC38117
MLOC	MLOC_1137.2	2183	7e-23	491 - 551	98	60 / 61	minus	ABC20479 ABC21055 ABC38117
JLOC1	JLOC1_703.3	2102	4e-23	1515 - 1575	98	60 / 61	plus
JLOC1	JLOC1_703.2	1639	4e-23	1052 - 1112	98	60 / 61	plus
JLOC1	JLOC1_703.1	1970	4e-23	1383 - 1443	98	60 / 61	plus
Harvest21	ABC21055	1048	3e-25	989 - 1048	100	60 / 60	plus	ABC21055
Harvest35	U35_8518	1048	3e-25	989 - 1048	100	60 / 60	plus

Contig Sequence (1048 bp)

>U35_8518 1048 Hv_44K_v2
GTTTGGGACTTATGGAGGCACTCTTGTTACAGTTTCAATCTTGAATTACATTCAAGATAA
CATAAGCTGGCAGTATGGGTTTGGAATCCCTTGTGTCGTCATGTCTCTTTCTCTTGCAGT
TTTCTGGCTTGGGACCAGGACTTACCGCTTTTACCCTGTAAGAAGTGACGGAAGTTTATT
GGGACAGATTCGCAAATACCTTTTATCATTAATTAGGACCTGGCATGCATCATGGTGTGG
GAGATCGCCTGATGATACTCACTGCATGCCAACATCGACATCCAGGGAAGCCAAGGATAA
TGCAGAAATGACATGTTTTCCTGATGAAGCCAAGTCAGTGCTTAAGTTGTTTCCGATAGG
GGCAACCTGCCTGATCTATGCAGTTGTTTTTGCCCAGTGGATGACGCTGTTCACTAAACA
AGCAAGTACACTAGATAGGTGGATAGGTAGCCTACAGATACCAGCTGCTGCCCTACAAAG
CCTGATCAGCGTGTCAATCGTCATCTCAATTCCTATATATGACCAGATACTCGTTCCGCT
AGCCAGAAAGTACTCAAAGAACCCCTGTGGTATCACACCCTTGCAAAGGATTGGAACCGG
ACTAGCCATCTCAGTGATCTTGATGGTTGTCGCGGCCCTCGTGGAGATGAGAAGGCTCAG
GGTAGCGAGAGAATATGGCCTAGTGGACAAACCTGAAGCAACGATTCCGATGAGCTTTTG
GTGGGTGGTACCTCAGTTCGTCCTGACCGGCCTGGCGGACATGTTCACAGTGGTGGGCTT
GCAAGAATTCTTCTACGACCAAGTGCCGGAGGATCTGCGCAGTATGGGCCTTGCCTTATA
CCTGAGCATATTCGGGGCCGGGAGCTTCGGCAGTAGCATTCTGGTGTATGCGATTGACTG
GGTAACCAGCAACGGCGGAGATAGTTGGTTCTCGGACAATCTAAACCGAGGCCATCTCGA
TTACTTCTACTGGCTTCTGGCCGTGCTCAGCGTTCTTGGGCTGGCTGCTTTTCTTTACTT
TTCACAAGTGTAATCCACAAGAAGAAGG

Homology of Contig U35_8518 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65200.3	549	4e-164	protein\|proton-dependent oligopeptide transport, putative, expressed
Brachypodium v1_2	Bradi2g56387.2	551	0.0
Arabidopsis v10	AT1G22540.1	557	4e-97	Major facilitator superfamily protein \| chr1:7964202-7966222 FORWARD LENGTH=557