barSeed - Barley Seed Development Database

Probe CUST_24729_PI390587928

Source Contig U35_8546

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24729_PI390587928	Hv_44K_v2	GTTCTATCAAATAAATGCACTTGGAAAATACCTGTGTTTTCCGGTGTCTATTGGTCTAAA	1067	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78661.1	1693	2e-23	70 - 127	100	58 / 58	minus	ABC21200
JLOC1	JLOC1_52427.1	1647	1e-23	23 - 80	100	58 / 58	minus
Harvest21	ABC21200	968	3e-25	897 - 956	100	60 / 60	plus	ABC21200
Harvest35	U35_8546	1139	3e-25	1068 - 1127	100	60 / 60	plus

Contig Sequence (1139 bp)

>U35_8546 1139 Hv_44K_v2
GAGACATGACGCTCTTCTCCAACTAACCATCATGNACAGCTCTTGAGCTATTTTTGTAAT
ATCGACACGGCAGACATTAATCACTGCCCCAATACCCGTTTCAACCAATTGACATCACTT
CCCGACTCCTCCGGCTTGTGGCAAGGAAACAAAAAAACATGTTAACTATTTTATCTTTCT
CATCTTCTTTACTGTTGATACATAATACGCCCGTCTTTAACGGGCTCCAAGGTCGAGGCT
GAATCAATCGTGCCACTCGTTCGAGCGGCCGCTGGAGAAGGACGGGCCGAAACCCAATAT
CGTATCCTACAATGAGTTGATTCGAGGATATTGCAAGGCAGGGAGGCTCCAGGAGGCCAA
GAAGATGTATGATAATCTGATGAAGAATGAGTGTGTCCCGGATAAGGGGACATATGAGAC
TCTCTCGCCACATCTTCTGCAGGCTGGAGAGCTGGATTGTGCACTGAGGTACTGTTATCA
AATCTTTGGTACTAAAAGGTGTTGTGGAGTCGAGTATGGTGTGCTGCAGGATGTTGTGAA
TGCATTGGTAGATGCATCGAGGCTGAAGGAGGCTACCAAGCTTGATGAGCTCAAGTGGAA
GTACAGCTCGAGGATGCCACCTAGTGCTGAAATGATGAGGAAGAATCAATATCAGATGAA
AAGGAGTGTGGAAGTGGAAGATGAGACTGAAAAATAAAATTCATAGGTCAGGCTTTGACT
GATGCAAGCCGAATTCCACCAGACCTGTTTTACTCTGTTTCTTCTGTTGGTATGATGGAA
CAAAAAATGCAAGTTTAAGTAGTCGTTAAACTAGTTTAATATGGTATTGGTTAATCTTGA
CCTGTGTTGTACTACTTTTAGAAGAGTGCAGCCCCCGGCTGGGCTCTGCCCGGCCATGGT
GCTGCCCCCGCTGACTCCCTACGGACCTCCTCCAGTGAGGCAACGAGAGTGCAGCAGGTT
TGTCAGTTGCAGAACTCATGCGCATTGTGGTTATGAAAAATAGTTGCCAATTTCATCACG
GTGGTTGGGTCTTTTTGTGTTTGGGGAACTCTTGAATACCACTGCAGGTTCTATCAAATA
AATGCACTTGGAAAATACCTGTGTTTTCCGGTGTCTATTGGTCTAAAAAAAAAAAAAAA

Homology of Contig U35_8546 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None