barSeed - Barley Seed Development Database

Probe CUST_24695_PI390587928

Source Contig U35_18357

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24695_PI390587928	Hv_44K_v2	GAAGTTGAAGCTCCTTCACTTGTTATTGTCTCAAAGCTGGTTTTGTAATTGTATACCAAA	1039	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.124	2.171	0.964	0.828	0.291	0.307
Raw	50.205	81.186	31.756	44.979	3.296	4.866

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248597.1	1024	2e-24	885 - 944	100	60 / 60	plus	ABC13256
MLOC	AK356038	1012	2e-24	906 - 965	100	60 / 60	plus	ABC13256
MLOC	MLOC_62471.4	766	2e-24	513 - 572	100	60 / 60	plus	ABC13256
MLOC	MLOC_62471.1	397	2e-24	312 - 371	100	60 / 60	plus	ABC13256
MLOC	MLOC_62471.2	518	2e-24	433 - 492	100	60 / 60	plus	ABC13256
MLOC	MLOC_62471.3	567	2e-24	392 - 451	100	60 / 60	plus	ABC13256
JLOC1	JLOC1_40880.1	636	8e-25	354 - 413	100	60 / 60	plus
Harvest35	U35_18358	523	3e-25	409 - 468	100	60 / 60	plus
Harvest35	U35_18357	1163	3e-25	1040 - 1099	100	60 / 60	plus

Contig Sequence (1163 bp)

>U35_18357 1163 Hv_44K_v2
GGTCCGTCTTCGCCACGGCCCTTCCACCAAACCCCGTGCACTCTTCGCCTCGCAGTCAAG
CTCCTAGCGCGCGACCATGGCAGCGGCAGGAGCCCTGGTCGTGTACAGGGCGGTGTTCGC
CGCGCTCGGCTGCCTCATGGTGGGCACCCTGGTGTACACCTGCATCACCGATGGCTCGCC
GTTTCGCATCGAGCTGCTGACTCCGTGGATCGTGACAACATTGGTTGATTTTTATGTAAA
TATAGCAGCGATTTCGACTTGGGTTGTCTACAAGGAAGGAAATTGGATTAGTTCTATCTT
CTGGGTAGTACTGTTGATTTGTTTCGGCAGTGCTACTACATGTGCTTATATTGTTAGCAA
GTTATTTGAGATAACATCTTCAGGGCTTTCCCAAAATCCGCTTGATCTTTTGTTGCTCAG
GCAAGATAATCTACCCGAAAGGAAGTGTTCTTTTGTTGTCATCGGGAGAACTATTTTCAG
CATTTTGGGCATACTCATGGCTGCACTTGTCACGTATACTGTCATTACAGATGGACTGCC
TTTCAGGAAGGATTTGTTGACACCGTGGATGGCTGCAACCTTAATTGACTTCTATATAAA
TGTCTTTGCAATATCGGTATGGGTTGTTCACAGGGAGTCGACTTGGATCTCAGCAGTCAT
ATGGATATGCTTGTTGATATGCTTTGGAAGCATCACAACATGTGGCTACATTGTGGTTCA
ACTTCTCCAAGTGTCGTACCAAGACCCAGTCTACCATCTGCTACTGAACTCCCATAGCAA
GTATGGAATCGCACCCTTGCAGTAATCGCCGATCCTCTTCTACTAGCTTGGTTAGCTTAC
AGTTGGTGTAAATTTTGCAACATACAATCATTTATGTGGCATTTACCTGATTGAAATGTA
GGAAGATCTGAAAACTCATTGAAGGGGTATGTTCTTGGTACACAATAATGTCACCTATGT
TCATAATGGTTCTTCAATAAAGGGTATACCAGAGTAGCAATAGAAGTTTTTTCTTCGTGG
AATGGAATGATTTCTTAACGAAGTTGAAGCTCCTTCACTTGTTATTGTCTCAAAGCTGGT
TTTGTAATTGTATACCAAATTTAATTGCTTGGCAAATGATAGACACCAGATTTTTCCCCT
TTTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g38320.2	243	1e-132	protein\|expressed protein
Brachypodium v1_2	Bradi1g37311.3	246	2e-136
Arabidopsis v10	AT1G22750.4	257	2e-61	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 186 Blast hits to 155 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). \| chr1:8050911-8052714 FORWARD LENGTH=257