barSeed - Barley Seed Development Database

Probe CUST_24693_PI390587928

Source Contig U35_18358

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24693_PI390587928	Hv_44K_v2	TCTCAAAGCTGGTTTTGTAATTGTATACCAAATTTAATTGCTTGGCAAATGATGGACACC	436	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248597.1	1024	7e-23	913 - 972	98	59 / 60	plus	ABC13256
MLOC	AK356038	1012	7e-23	934 - 993	98	59 / 60	plus	ABC13256
MLOC	MLOC_62471.4	766	7e-23	541 - 600	98	59 / 60	plus	ABC13256
MLOC	MLOC_62471.3	567	7e-23	420 - 479	98	59 / 60	plus	ABC13256
MLOC	MLOC_62471.1	397	9e-22	340 - 397	98	57 / 58	plus	ABC13256
MLOC	MLOC_62471.2	518	9e-22	461 - 518	98	57 / 58	plus	ABC13256
JLOC1	JLOC1_40880.1	636	4e-23	382 - 441	98	59 / 60	plus
Harvest35	U35_18358	523	3e-25	437 - 496	100	60 / 60	plus
Harvest35	U35_18357	1163	1e-23	1068 - 1127	98	59 / 60	plus

Contig Sequence (523 bp)

>U35_18358 523 Hv_44K_v2
CACGTATACTGTCATTACAGATGGACTGCCTTTCAGGAAGGATTTGTTGACACCGTGGAT
GGCTGCAACCTTAATTGACTTCTATATAAATGTCTTTGCAATATCGGTATGGGTTGTTCA
CAGGGAGTCGACTTGGATCTCAGCAGTCATATGGATATGCTTGTTGATATGCTTTGGAAG
CATCACAACATGTGGCTACATTGTGGTTCAACTTCTCCAAGTGTCGTACCAAGACCCAGT
CTACCATCTGCTACTGAACTCCCATAGCAAGAAGATCTGAAAACTCATTGAAGGGGTATG
TTCTTGGTACACAATAATGTCACCTATGTTCATAATGGTTCTTCAATAAAGGGTATACCA
GAGTAGCAATAGAAGTTTTTTCTTCGTGGAATGGAATGATTTCTTAACGAAGTTGAAGCT
CCTTCACTTGTTATTGTCTCAAAGCTGGTTTTGTAATTGTATACCAAATTTAATTGCTTG
GCAAATGATGGACACCAGATTTTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18358 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g38320.3	238	5e-55	protein\|expressed protein
Brachypodium v1_2	Bradi1g37311.2	239	5e-57
Arabidopsis v10	None