barSeed - Barley Seed Development Database

Probe CUST_24663_PI390587928

Source Contig U35_18369

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24663_PI390587928	Hv_44K_v2	ACCGACTCTCATCTGGACCACGGTGGAGTAAATCAAATTATCAAAGCATTGTACAAAAAA	1599	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63880.2	2903	9e-22	75 - 129	100	55 / 55	minus	ABC10650 ABC10651
JLOC1	JLOC1_41888.2	1646	5e-22	1569 - 1623	100	55 / 55	plus
JLOC1	JLOC1_41888.1	1241	5e-22	1164 - 1218	100	55 / 55	plus
Harvest21	ABC10650	669	3e-25	600 - 659	100	60 / 60	plus	ABC10650
Harvest35	U35_18369	1671	3e-25	1600 - 1659	100	60 / 60	plus

Contig Sequence (1671 bp)

>U35_18369 1671 Hv_44K_v2
ATCTGCAGAACCGTCCCCGCCTTCTTCCCCCCTCCGTCAAGAGATCCTCCTCCGGAGGGC
TCGACCCGACCCGACACGACACCTACCTCTCGCCAAACCCCAATCCGTCCCTTCTCGAAC
CTTCTAGATCCTCCCCTCCGCGGCCATGGCCACGCCCTTCCCCCTCCTCCTCCTCCTCCT
GCTCCTCCCGTCCCCCGCCCCCGCCGGCGCCGCCTCGCTCTCCCCGCTCCCGGCCACCTC
CAACGCCTCGGCGCACGCCTACGCCTTCGCGGGCCGCGAGCAGGTCCCCGCCCCGGATCC
CACCTTCTTCGACGACGTCATCGACGCCGTCGCCGACAAGTACGGATGGGACCCCGACGC
CGAGGTCCGGGTCTGGCCGCTCGACGCCGAGGGCGCGCTCGTCGGCGCCGTGCAGCGCTA
CGAGTTCCGCGCCCGCGCGGGGGGCGCCTTGTCCGCCCTGGCGCGGTCCTCCGACGAGGC
CGTCGACTGGAGCCGCCCCGACGCCCCCGCGGTCAAGGAGGTGGTCGGGCCCGACGGGGT
CGACTTCGTCGCCGGCGACGGCGCCATCGGGTTCGGCTCAGGCGTCAGGGACCTCGACCT
CTTCGGGCCGTTCGAGCTGGTGGTCTCCGATGGCGCTGGCGGGGGCCTCGCAGAGCTCCA
GTTGCCGTCGTTGAATGCCACGTATACAGGGTTGAAGAGGGTACTTGTTGCTGCTGGTGT
TGCATTAAAGATTACTGGTGCGCTGAGAGCATCCTTTTCCCATCCTCACAGTATAGGCCT
TTTATCAAATGGAAGCTTGTTGGCTACTAACAGGGGACTAAGCCAAATATTGCATCTCAG
CCACTCAACCTGTGCTCCATTACTTCACATGAGAATTGTAGGATCATCAGTTACAATAGT
TGCACATGAAACCAATGTCTCTGGGGGCCACATGAAGCCCTTGTTGACTTCTGATGACGC
CATCGAGTTACTATCAGACCAGGCTGAAGTGAATGAGATGTCAGATCGGTTGATCTCAGC
ATGTGTGTTCTGCTCAATCAGTCCAAAACTGCCGAGGCTTGAAGAACTCCTGAAGACTTG
GTTCAACAAGAGGAATGAGTTCAACAGGACAATGAACTTCTTCGAAGCCAGAGTGACGTC
AATGACCCTGGTAAAATTCCGTTTGGAGCTCGAGAGGGACATCACCGAAGAGGACGACAT
CTGGGACGATGTTCCAGAGTGGAAAACCTTGCCTGTGGTCCAGCGAATCACACTTGACGT
CATCGCCAGGGTTGAGGAAGAGGGAAGGCTCAAGGCTATATCGGTGAAGAAGGTGAGGAA
ATCTTTAGAGATAGCGGACGCTACTTCTTGGAGCAGCCTGACTTCGAACGTCTCCTTCGC
AGACTTCACGTCGTTGGTTCTGCCGCCTGATCCGTTGTCACTGGATGTAAAATGGTAACA
GTTTCTCCTTGTCTATTTACTTCTGATACTGTTAGGGGCTGATAGGAAATTGCACATATA
CATCAATTTCGTGTATGATTGTCTGGGCCAGAAGTGTACCTGCAAATGTGGTTTGTCTGT
AACGCAAGGTTGAGGTTTTGTATTGTTCCTGACTAAGTTACCGACTCTCATCTGGACCAC
GGTGGAGTAAATCAAATTATCAAAGCATTGTACAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18369 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55630.1	176	4e-60	protein\|expressed protein
Brachypodium v1_2	Bradi1g07577.1	426	4e-178
Arabidopsis v10	None