- Probe CUST_24625_PI390587928
- Source Contig U35_20693
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_24625_PI390587928 | Hv_44K_v2 | AGCTATGGCGCAATCGTGGAGGGTGCTCATGCAGGGGCTCACGTCGCTGGTGTTTCTCTG | 444 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.250 | 0.688 | 0.780 | 1.512 | 2.295 | 5.532 |
| Raw | 2.778 | 21.741 | 21.129 | 62.692 | 35.885 | 92.943 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361199 | 4471 | 2e-24 | 2916 - 2975 | 100 | 60 / 60 | plus | ABC02932 ABC05216 ABC05217 ABC05218 ABC14249 ABC47180 |
| MLOC | MLOC_63657.1 | 2406 | 2e-24 | 1757 - 1816 | 100 | 60 / 60 | minus | ABC14249 |
| JLOC1 | JLOC1_41718.1 | 3257 | 8e-25 | 847 - 906 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC14622 | 537 | 3e-25 | 445 - 504 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_20693 | 537 | 3e-25 | 445 - 504 | 100 | 60 / 60 | plus |
Contig Sequence (537 bp)
>U35_20693 537 Hv_44K_v2 AAAAACCACCGTGATAAAGTTGCAGCAATGCCATCCCCAGCCTACCTATCTCCTCCCTTC CTCCCCATCCACCAGCAGGAGCACGAGCACGAGCCTTCACCCCATCTCCGGCGGCCGCAA CCGTCGCAGCCGCCCACGGCACATGTCAGGTCTCGTGCTTCTTAAAGCCAAGGCCGGCGA TGGTGACGGAGGGGACGCCGACCTCCTTCTCCTGGCATCGCGGCGACACGCGTAAGAGGC GGACCGCACGATACTGTTCATGTGCGCGGCATTCCGCGTGGCCGCGTCGCTCATCCGCGT TCTATACCACGTCGCGGCCGGTAGCGTCCTCGGCGTGGCCAGGGTCCTCTTCGCGGCGGC CAACGAGCGGTGCCTGCGGTGCATGAGCCAGGCGGCGCTCGGGCGCAGCGTCACCGGCAC CTTCTGCGGGGACTTGTTGGTGGGAGCTATGGCGCAATCGTGGAGGGTGCTCATGCAGGG GCTCACGTCGCTGGTGTTTCTCTGCGCGCGCGCCGACGAGTACGTCCGGCCGCCGCC
Homology of Contig U35_20693 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |