barSeed - Barley Seed Development Database

Probe CUST_24619_PI390587928

Source Contig U35_20699

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24619_PI390587928	Hv_44K_v2	TGGTAGTTACCATTAGATGTTGTAATTTAGCTGGTAGAGCTTTCCGGCAGGACGAAAAAA	1198	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.024	2.258	1.134	0.801	0.296	0.354
Raw	142.793	260.031	110.101	119.983	15.164	20.941

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC14198	1219	3e-25	1149 - 1208	100	60 / 60	plus	ABC14198
Harvest35	U35_20699	1269	3e-25	1199 - 1258	100	60 / 60	plus

Contig Sequence (1269 bp)

>U35_20699 1269 Hv_44K_v2
GGTCCGGAATTCCTCTAGTACTGTTGGCCTGGACAACCCCAAGTTTATCGCCCCCCTCCC
TCTCCCTCCTGCCGAAGTTTCGCCCGCCAGCGATCCCCGGACGGGAGAGAGGCGCCGCCC
GCAAATGCTGCCGCCGATCATGTGAACTTGGCATCACGAGACGATGCTACTCATCATCAG
CTTGTAGCACGGCCGTTGGATCCTCTGCGCCAGTCGATCTGGACGGCGGAGGACGCCGCT
GGCCGCGAGCCATTCGAAGCGGCCTGGTCGGGAGCCCTGCAACCCAATCCGTCCGCCATG
GCGCTGTCGGTGCACGCCGTCGCCGTCGCCTCCCCGTGTCTCCTGCCCCCTCCCTCGCAC
CACCGCTCTGCTCCGGGCTTGGCGGCTCCTCTCCGCCCCGTCCTCCCTGTCGTCGCCCCA
CTCCGCTCCGGCCCCAGCTCCTCCCGGTGGACGCGGCGGGCGAGCGTGCGGGTACGCGCG
AGCGCCGGCGGCGGAGGCGGGCGGAGGAGGGAGTCCCCCTACGAGGTGCTGGGCGTGTCG
CCGTCGGCCGCGCCCGTCGAGATCAAGCGCGCGTACCGGCGCCTCGCGCTCAAGTACCAC
CCGGACGTCAACAAGGAGGCGAATGCTCAGGAGAAGTTTCTGAGGATCAAGCACGCGTAC
AACACGCTGATGAACTCCGAGAGCCGGTCCAAGTACGCGAGCAGCAGCAGCAGCCCTGAT
TCTTCGTGGTCTCCAGGGAGCAGGAAGCCAGCTGATGCAGAAGAGGATTTCTATGGGTTT
GGGGATTTCCTGAATGACCTGCAAACAGAATTTCAGAACTGGGAGGCTGGCCTGAACTCA
GAGCAGAAACCTAAAAGCCTGTGGGAAGAACTATCAGCGATTGGTGAGGAGTTTGTCGAG
TTCCTGGAGAACGAACTGAACATCGACGGCTCGAGCACTGAGGACGACGACAGGAACGAT
CCGTACACGCAGTTTGGAGGGAAAGGCGGAAATGCTGAGGGTGACAAGAAAGGAACAAGC
AGTTCCGACGATGGCGTGTCGGACATAGAGTCGGTCCTCGAGCAGCTGAAGAAGGAGCTT
GGGCTCAGCTGAACCGCCGCCTGTTGGCAACACAGTGGTGGCAACTGCAGCCATTGTAAT
TTGTAGCAAATTGGTGTTCATATTCAGGTACGATGTTCTCCCGGATCGATGGTGGTAATG
GTAGTTACCATTAGATGTTGTAATTTAGCTGGTAGAGCTTTCCGGCAGGACGAAAAAAAA
AAAAAAAAA

Homology of Contig U35_20699 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60790.1	269	2e-70	protein\|heat shock protein DnaJ, putative, expressed
Brachypodium v1_2	Bradi1g03580.1	270	4e-77
Arabidopsis v10	AT5G59610.1	268	3e-51	Chaperone DnaJ-domain superfamily protein \| chr5:24013165-24014954 FORWARD LENGTH=268