barSeed - Barley Seed Development Database

Probe CUST_2460_PI390587928

Source Contig U35_40578

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2460_PI390587928	Hv_44K_v2	GCTGTTAGAATCTCGTGGGCTGTGAAATGCTGATATTTTACTGTGATTGGATTTTCAGGT	174	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74291.1	1332	2e-24	737 - 796	100	60 / 60	plus	ABC06326 ABC06921
JLOC1	JLOC1_49505.2	1720	8e-25	689 - 748	100	60 / 60	plus
Harvest35	U35_40578	576	3e-25	175 - 234	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_40578 576 Hv_44K_v2
TTTCTCTTTTCTTGACTTAAATGTTTCACAAGCATGGTGATTTTGAGCTCATAAATGTCC
CCCCAGTTCTTATCTGAATCCCATTTTGATGGTCAGCTTTACGGCGAATCGCTAACTTAT
GTTCCGAGTACTGGTATTTTATTTTTTTTGGTGTGTGCAACATACTGATTTTGGGCTGTT
AGAATCTCGTGGGCTGTGAAATGCTGATATTTTACTGTGATTGGATTTTCAGGTTCTTCT
CGGCGATGTGGGTGCTGGGAAATCCAGCCTGGTGCTTCGGTTCGTAAAAGGACAATTTGT
TGAGTTCCAGGAATCGACAATTGGAGCGGCTTTCTTCTCTCAAACACTGGCTGTTAATGA
CGAGACTGTGAAGTTTGAAATCTGGGATACTGCTGGGCAGGAGAGGTATCATAGCTTGGC
CCCCATGTACTATAGGGGTGCTGCCGCAGCCATAGTTGTCTATGACATCTCGAACCAGGC
ATCCTTCACCCGAGCAAAGAAATGGGTTCAAGAACTTNNCAGCTCAGGAAACCAGAATAC
AGTAGTGGCTCTTGCTGGCAACAAAGCTGATTTGCT

Homology of Contig U35_40578 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g46390.1	204	1e-68	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi1g12890.1	204	3e-69
Arabidopsis v10	AT5G45130.1	200	1e-65	\| Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A \| RAB homolog 1 \| chr5:18244495-18246060 FORWARD LENGTH=200