barSeed - Barley Seed Development Database

Probe CUST_24559_PI390587928

Source Contig U35_48269

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24559_PI390587928	Hv_44K_v2	GCTTGTCATTAATTGCCGTTGTTTGATATTGGGTGTATCTGATTATTGTAACGTCATATG	20	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358796	1276	2e-24	1112 - 1171	100	60 / 60	plus	ABC05553
Harvest35	U35_48269	388	3e-25	21 - 80	100	60 / 60	minus

Contig Sequence (388 bp)

>U35_48269 388 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAACATATGACGTTACAATAATCAGATACACCCAATATCAAAC
AACGGCAATTAATGACAAGCACATGGATACTTGAGTCCATCCAGAGTTGGAGTTAATAGA
ACTTGATATTGTACTCATAGATATGGTCGCTGACCTCCTGGGCCCTCTCCTGCTGGATAA
AGTGGCCAGCGCCGGGGATGACGACCACCTCATCTAGCAGCGGAACATCCACCTTAAACC
CACCGCCGTGGATGTACTCCTGTATCCCCTCAAAGTTGTATGTGATGTCACCGTCCCCCA
CAATGTACTTGGTCGGCACCTGCACTTTGGCGTCCGCCCATGGCGCCGNCAGCTCGCAGT
TCTTGTCAAAGTTCCGGTAGTAGTTGAT

Homology of Contig U35_48269 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None