barSeed - Barley Seed Development Database

Probe CUST_24550_PI390587928

Source Contig U35_50589

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24550_PI390587928	Hv_44K_v2	TGTTTTCTTGTGGTTCCATGTCATTATTTCAAGGCCTTACTAGTTGCTGCTTGTATATCA	249	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68256.2	3125	2e-24	2139 - 2198	100	60 / 60	minus	ABC14246
Harvest35	U35_50589	443	3e-25	250 - 309	100	60 / 60	plus

Contig Sequence (443 bp)

>U35_50589 443 Hv_44K_v2
ACCGTAGGAGAGGGCTCATCTAGACGTGGCCGGCTAAGTGACAGAATGCAAACAAAAGAA
GGAAATTTGTGGAAGGAATTGTGGGAAGCAGCAAAACCTATACCTGCTGTTGAACAAACT
CCGCTATATGATGAAGATTTAGCTGTGGAGAGCATATTTGATGCCTTGGAGGTTATTGAA
CCAGCAAAACTGTTTCAGCAGCTACTCTCAGTCATTGTGAGTTGAATGTTTGCATTTTTG
TCTCCGTGATGTTTTCTTGTGGTTCCATGTCATTATTTCAAGGCCTTACTAGTTGCTGCT
TGTATATCAGCTNTCTGTATGCTTCGTAGCAGCTGAATCAGTGCTACCAGCAGACAGTAA
TCTGTCAAAATTATTCTACGATTGTAAAGACTACATCATTGGCATTTACCAAGATGACAT
GTCGAAAGAAAAGCTGGATGAGA

Homology of Contig U35_50589 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None