barSeed - Barley Seed Development Database

Probe CUST_24533_PI390587928

Source Contig U35_50599

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24533_PI390587928	Hv_44K_v2	CCAGTTTCTTTATAGCATACCCTGTCAAGTGTGTGCTCAATATGTTCGAACTAGTAATTT	498	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368446	3379	2e-24	2544 - 2603	100	60 / 60	plus	ABC01983 ABC10695 ABC10696 ABC14205 ABC21919 ABC22344 ABC45186
MLOC	MLOC_3360.1	1422	7e-23	955 - 1014	98	59 / 60	plus	ABC21919
MLOC	MLOC_3360.2	1786	7e-23	1319 - 1378	98	59 / 60	plus	ABC21919
MLOC	MLOC_3360.3	1419	7e-23	952 - 1011	98	59 / 60	plus	ABC21919
JLOC1	JLOC1_2022.1	1419	4e-23	950 - 1009	98	59 / 60	plus
Harvest21	ABC10697	1023	3e-25	954 - 1013	100	60 / 60	plus
Harvest35	U35_50599	568	3e-25	499 - 558	100	60 / 60	plus

Contig Sequence (568 bp)

>U35_50599 568 Hv_44K_v2
TGTTGGCCTTTGAGAAATTTCTTGAGGAAAACGAGGAATTGGATTCTGAATACAAAGTAG
TTCTACTGCAGATTGCAGTGCCAACCAGAAGTGACGTACCTGAATATCAGAAGCTAGCAA
GTCAAGTGCATGAATTGGTTGCACGCGTAAATGGTCGATTCGGAACACTGAAAGCAACTC
CTATTCTACATTTGGTTCGCCCCCCTCCCCTATGCACCCACATTTTCTATTTGGGTTATA
TAGGACTAGTGTTCATATATTTTTTGTAGTGGGCTAGTAATAATGAATGGTTCTACCGAA
ATGCCCCAGTGGATCTTGTATTATGTTAAGATGTAAAGCTGGGTAGCACTAAGAGCTCGG
TTTTCTGCTATTATTGGGTAGCACTAAGCTCGGTTTTCTGCTGACCAGTTTGCTGCTCGT
GCTTGAAATGTTCATGGTTATAGAGGGGAATTCAGTTGTAGTAGCATATTCTAGGAAGTC
CACGGGTTTAGCTTGTATCCAGTTTCTTTATAGCATACCCTGTCAAGTGTGTGCTCAATA
TGTTCGAACTAGTAATTTCATATATTTA

Homology of Contig U35_50599 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None