barSeed - Barley Seed Development Database

Probe CUST_24506_PI390587928

Source Contig U35_7212

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24506_PI390587928	Hv_44K_v2	TGAAGATAAGGTGGAAGTAAGATCATCAGAGGAAACCGATGCTCTGGAGGAAGCAAGACT	1112	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366903	2174	2e-24	1680 - 1739	100	60 / 60	plus	ABC14874
Harvest21	ABC14874	1594	3e-25	423 - 482	100	60 / 60	minus	ABC14874
Harvest35	U35_7212	1594	3e-25	1113 - 1172	100	60 / 60	plus

Contig Sequence (1594 bp)

>U35_7212 1594 Hv_44K_v2
TGCCGCGTCGGGGGGGCTGTGGCCGGAAGTGCTAATTTGCTTCAGGATTTGGTGAAGGCT
GGTGGGTCGTTGCTGCTCATCGGCCCACCAGGGGTGGGGAAGACGACTGTCATAAGAGAA
ATTGCACGAATGCTAGCAGATGACTACGATAAGCGGGTGATGATTGTTGATACATCCAAT
GAGATAGCTGGAGATGGCGACATTCCTCACCCAGGAATAGGCAATGCCCGTAGGTTGCAA
GTGCCTAACCAAGAAATGCAGCATAAGGTGTTGATAGAAGCTGTGGAAAATCACATGCCT
CAGGCAATCGTCATTGATGAAATTGGAACTAAGCTAGAGGCTATGGCTGCTAGCACCATT
GCACAGCGGGGGATACAACTTGTTGCCTCCGCTCATGGTGTAACAATAGAGAACCTGACC
ATGAATCCTTCACTAGATATGCTTGTCGGAGGAATACAGAGCGTCACCCTTGGCGATGAA
GAAGCAAGCAGGAGAAGGGTCCAAAAAACGGTCCTAGAGCGCAAGGGCCCGTCAACATTC
GCATACGCTGTAGAGATTGTGTCAAAAACTGAGTTACGTGTCCATCGTAGTCTGGAGGCT
ACAGTAGATGCTCTGCTTGCAGGTAGAATGCCTAATGTTGAAATTCGTAAGTTGGGTTCA
ACCGGCTCAGTGCAGCAGGAAGTTTCTGTGCAGAAGGATCAATTTCGTCGTGATCCTTAC
AAAATTGTGTCTCAATTTGAAGTTGCTTCCTTAAGTAATGCAAGAACAAGCTTGGACTCT
GCATTTAATCTTGATTCTGCCAACGGACATATAGAGAACTCTAATGTGTCTGAAGCAGGC
TTCAATCTCTATGTTTATGGGATATCCGAGGAAATTGCCTTGCAAGCGATTAAACAACTG
GAGCTGGAGGACATGATTACTTTGACTTATAACATCAGTGAAGCTGATGCAGTGATTGCT
TTGCAATCGAAGCTCAAGAAGAATTCTCAGATTCAGGCTTTGTTGAAATCTGAAGATATA
CCGGTTTTCTTTGCTAAGACAAACTCCCTGGTGCAAATTACCAGGGCACTTCGCGTCCTT
GTCGATGATCACGTGGATGGGTTGATCGATGTTGAAGATAAGGTGGAAGTAAGATCATCA
GAGGAAACCGATGCTCTGGAGGAAGCAAGACTGGCAGTCGAGCAGGTAGTGATCCCGAAA
GGGGAGAGCGTGCAGCTCCTGCCCCGACCATCGACCATCATCTCCTACCAAGTGAACCTC
GTCAAAAGCTTCAACCTCAAGTGGGAAGTCACAGGCCAGGAGCCGAACGCGTGCCTACGG
ATCCTTCCGCAGTTCGCGGACAGGGAACAAGTTGCCGCCTCGGAGCAAGAGACCTCCGAG
ACCGCACCCGGGCTCACAGATTCAGATGGCAGCTCCGGTCTCACCAGGCTACCCTTCCTC
CCAGAGTAGCAAGCATATCCTGCTGAGAGTTCCTTTGCCGTGTGCCTCTTCTGTACCTAG
TAGCTGTACATTCCACTCCTTTCCTTTTTGCAGCCATTCGCCGTCGCTGGTACCCTGGTA
AACTCTCTCTCTCAACCGAAACTCCGAAAGCAAC

Homology of Contig U35_7212 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g06190.1	644	0.0	protein\|uncharacterized protein ycf45, putative, expressed
Brachypodium v1_2	Bradi1g49040.1	651	0.0
Arabidopsis v10	AT1G73170.1	666	2e-176	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:27511722-27514783 REVERSE LENGTH=666