barSeed - Barley Seed Development Database

Probe CUST_24487_PI390587928

Source Contig U35_7233

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24487_PI390587928	Hv_44K_v2	ATACCTCAACTTGGTTGGCGTGACCATTGGCTACACCATCACCACGGCCATCAGCATGGG	564	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9930.1	2163	2e-24	1476 - 1535	100	60 / 60	minus	ABC02996 ABC02999 ABC13524 ABC14547 ABC47145
MLOC	MLOC_9930.2	2162	2e-24	1475 - 1534	100	60 / 60	minus	ABC02996 ABC02999 ABC13524 ABC14547 ABC47145
MLOC	MLOC_9930.4	1347	2e-24	666 - 725	100	60 / 60	minus	None
MLOC	MLOC_9930.3	2161	2e-24	1474 - 1533	100	60 / 60	minus	ABC02996 ABC02999 ABC13524 ABC14547 ABC47145
JLOC1	JLOC1_6452.1	2319	8e-25	699 - 758	100	60 / 60	plus
Harvest21	ABC17904	538	3e-25	469 - 528	100	60 / 60	plus
Harvest35	U35_7233	635	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (635 bp)

>U35_7233 635 Hv_44K_v2
CTTCCGACGGTCCCAGATCCCTCTTCCTCCTCCGTCCTCCGGCGCGCTTACATAAGGGCG
TCCTCTCCCTCACTTGCCACCAACACCACTCTCTCTGTTTCTCCCCACCAACACCAGCGG
TGCGCAGGAGACACACCTACGTCCGTGTGCTTGTGCTTGTGCTTGTGTGAAGAAGCACGT
AGGTGTAACAATGGGGATGGAGAAGAGCAAGGCTAACCCTGCCGCCTTCAGCATCGCTGA
GGCCGGCTTTGGAGACCGGACGGACATCGACGACGACGGCCGCGAGAGGCGTACCGGTAC
GCTGGTGACGGCCAGCGCACACATCATCACGGCGGTGATCGGGTCCGGGGTGCTGTCGCT
GGCGTGGGCCATCGCACAGCTCGGGTGGGTCATCGGCCCCGCGGTGCTCGTCGCCTTCTC
CGTCATCACCTGGTTCTGCTCCAGCCTACTGGCCGACTGCTATCGCTCGCCGGACCCCGT
CCACGGCAAGCGCAACTACACCTACGGCCAAGCCGTCAGGGCAAACCTAGGAGTTAGCAA
GTACAGGCTCTGCTCACTGGCCCAATACCTCAACTTGGTTGGCGTGACCATTGGCTACAC
CATCACCACGGCCATCAGCATGGGGGCGATCGGAC

Homology of Contig U35_7233 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g04180.1	488	2e-84	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi1g57880.1	474	9e-85
Arabidopsis v10	AT5G49630.1	481	2e-57	\| Symbols: AAP6 \| amino acid permease 6 \| chr5:20142681-20146441 REVERSE LENGTH=481