barSeed - Barley Seed Development Database

Probe CUST_24431_PI390587928

Source Contig U35_6198

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24431_PI390587928	Hv_44K_v2	CGATAATAAACGTCGCACTTAAAATAAATGTTGGTACCGTACGTAAAAAGGGTTTACATC	705	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.748	0.745	1.050	1.411	3.647	6.259
Raw	4.629	7.177	10.754	24.625	19.342	38.212

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361199	4471	2e-24	4412 - 4471	100	60 / 60	plus	ABC02932 ABC05216 ABC05217 ABC05218 ABC14249 ABC47180
MLOC	MLOC_63657.1	2406	2e-24	261 - 320	100	60 / 60	minus	ABC14249
JLOC1	JLOC1_41718.2	2817	8e-25	1903 - 1962	100	60 / 60	plus
JLOC1	JLOC1_41718.1	3257	8e-25	2343 - 2402	100	60 / 60	plus
Harvest21	ABC14249	842	3e-25	78 - 137	100	60 / 60	minus	ABC14249
Harvest35	U35_6198	842	3e-25	706 - 765	100	60 / 60	plus

Contig Sequence (842 bp)

>U35_6198 842 Hv_44K_v2
GGAAAGGGTCGGAGCAGTACGCGTGGCTGGAGCGGGACCTCGCCGGCGTGGACCGGCGGA
AGACGCCGTGGCTGCTGGTCCTGCTGCACGCGCCATGGTACAACACCAATCAGGCGCACC
AGGGGGAGGGCGAGGCGATGCGCGCCGCCATGGAGACGCTCCTCTACGAGGCCCGCGTCG
ACGTCGTCTTCTCCGGGCACGTCCACGCCTACGAGCGATTCACGAGGATCTACGACAACG
AGGCCGACAGCCGGGGCCCGATGTTCATCACCATTGGCGACGGCGGCAACAGGGAAGGGC
TTGCTCTCGAGTTCCTCAAGGATCACAAGTCAGCGCACATGTCGGTGTTCCGGGAGGCGA
GCTTCGGGCACGGTCGGTTGAGAATCGTCAACGAGACGAGCGCCGTTTGGACGTGGCACC
GCAACGACGACGAATGCGCCACCGTCCGCGACGAGGTCTGGCTGGAGAGCCTGGCTAGTC
CAAAACTCTCCAAGCCAACTGCCGGTCGTCACGACGAGGAGTTGTAGGACGTTGCACATC
AATAAGCACTTTAGAGCCTACCAAACTCGGCAAACCAGTCACCCTATACGCCCGCAAACG
CGTCAGCGCATGTTCTTCGGACGGTCCCTCATATTTCGTTTCATGCATCCATATACTTCA
TATTCGGGGTTTTAAATCCATATAAAATCATGCACGTAGATCATTCGATAATAAACGTCG
CACTTAAAATAAATGTTGGTACCGTACGTAAAAAGGGTTTACATCAATTTTATTTGAAGT
GTACAATCAATCATCTGCTCTTTAATTTTCAATGTGAGTTCAGCATAAAAAAAATAAAAA
AA

Homology of Contig U35_6198 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05400.1	573	7e-95	protein\|Ser/Thr protein phosphatase family protein, putative, expressed
Brachypodium v1_2	Bradi4g42517.1	529	1e-101
Arabidopsis v10	AT3G52820.1	434	2e-71	\| Symbols: ATPAP22, PAP22 \| purple acid phosphatase 22 \| chr3:19574236-19576938 REVERSE LENGTH=434