barSeed - Barley Seed Development Database

Probe CUST_24399_PI390587928

Source Contig U35_23204

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24399_PI390587928	Hv_44K_v2	TGCAGTCTCAATTGATCCAAACTTTTCGTCATATCTTTATGACGAGTACTTGTCGAGTGT	463	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65169.3	1483	2e-24	615 - 674	100	60 / 60	plus	ABC02541 ABC11192 ABC11193
MLOC	MLOC_65169.2	4468	2e-24	3901 - 3960	100	60 / 60	plus	ABC02541 ABC11192 ABC11193 ABC21626
MLOC	MLOC_65169.1	4863	2e-24	3803 - 3862	100	60 / 60	plus	ABC02541 ABC11192 ABC11193 ABC21626
JLOC1	JLOC1_42866.1	4796	8e-25	3796 - 3855	100	60 / 60	plus
Harvest21	ABC17215	532	3e-25	464 - 523	100	60 / 60	plus
Harvest35	U35_23204	533	3e-25	464 - 523	100	60 / 60	plus

Contig Sequence (533 bp)

>U35_23204 533 Hv_44K_v2
ACCAGATCTTATATGAGAGAATACTATCAGCTAAGACAAACTCTTCTACAGCTGAAAAGA
AGTGGAGAACTTCCAAGGATACGAGCTCGCCACACCAATACTCAAAGTTTATGAGTGCAC
TTTATAACTTGCTTGATGGTTCTTCTGACAACACCAAATTCGAGGACGACTGCCGCTCAA
TCATCGGGACTCAATCCTATGTCCTTTTTACGTTAGATAAGCTGATATACAAAGTTGTGA
AGCAGCTTCAAGCGATAGCAGCTGATGAAATGGACAACAAGCTGCTCCAGCTTTATGTAT
ATGAGAAGTCCAGGTCTCCTGGAAGGTTCTTTGATCTAGTTTACCATGAAAATGCTCGGG
TTCTTCTCCATGACGAGAGCATATACCGATTTGAACGGCGCTCAAATCCTATGAGATTAA
CTGTTCAGCTCATGGAGTATGGGCATGAAAAGCCTGAAATAACTGCAGTCTCAATTGATC
CAAACTTTTCGTCATATCTTTATGACGAGTACTTGTCGAGTGTTTCNGATTCA

Homology of Contig U35_23204 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01020.2	1319	9e-105	protein\|transcriptional repressor, putative, expressed
Brachypodium v1_2	Bradi2g40052.2	1351	1e-104
Arabidopsis v10	AT1G70060.1	1326	2e-73	\| Symbols: SNL4 \| SIN3-like 4 \| chr1:26383789-26389568 FORWARD LENGTH=1326