barSeed - Barley Seed Development Database

Probe CUST_24332_PI390587928

Source Contig U35_29892

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24332_PI390587928	Hv_44K_v2	ATCCGTTTAAGGTCAAGATAAGTTACCTCGAGACCAAGACGAATAGTGAATTTGGATCAT	77	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11370.4	3894	2e-24	2985 - 3044	100	60 / 60	plus	ABC21021 ABC22074
MLOC	MLOC_11370.1	5010	2e-24	2117 - 2176	100	60 / 60	minus	ABC21021 ABC22074
MLOC	MLOC_11370.5	2743	2e-24	700 - 759	100	60 / 60	minus	ABC21021 ABC22074
MLOC	MLOC_11370.3	2365	2e-24	1232 - 1291	100	60 / 60	minus	ABC21021 ABC22074
JLOC1	JLOC1_7527.1	3445	8e-25	1985 - 2044	100	60 / 60	plus
Harvest21	ABC29457	137	3e-25	78 - 137	100	60 / 60	plus
Harvest35	U35_29892	137	3e-25	78 - 137	100	60 / 60	plus

Contig Sequence (137 bp)

>U35_29892 137 Hv_44K_v2
TCAAATTTGGGCTTCATACGACGATGATGATGGCATGCCTCGGTTTTACGCATTTATTCA
GAAAATTATCTCCTTGAATCCGTTTAAGGTCAAGATAAGTTACCTCGAGACCAAGACGAA
TAGTGAATTTGGATCAT

Homology of Contig U35_29892 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None