barSeed - Barley Seed Development Database

Probe CUST_24234_PI390587928

Source Contig U35_20753

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24234_PI390587928	Hv_44K_v2	ATTACACCGAGTTTACGCACGTAGCTAGACCAATTAGTGAGCTTAGCATATCTGCCATGG	20	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.689	1.198
Raw	2.670	3.022	2.453	3.437	4.910	2.806

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14814.1	1426	2e-24	18 - 77	100	60 / 60	plus	ABC03239 ABC03241 ABC03243 ABC42502
JLOC1	JLOC1_10120.1	1606	8e-25	101 - 160	100	60 / 60	plus
Harvest35	U35_20753	666	3e-25	21 - 80	100	60 / 60	plus

Contig Sequence (666 bp)

>U35_20753 666 Hv_44K_v2
AAGCAAGCTACTGAGCTATCATTACACCGAGTTTACGCACGTAGCTAGACCAATTAGTGA
GCTTAGCATATCTGCCATGGCTTCCAGCTGCTGCAGGACATGGCATCTCTTGCTCGCCAT
CTTCCTCCTCTCCTCCGCCGCTTACGGGCAGCTCTCGCCGTCTTTCTACGCCACGAGCTG
CCCGCTGCTGGAGCTCACCGTGCGCGCCACCATGGTCACCGCGCTCCTCGCGGAGCGCCG
AATGGGCGCCTCCCTCCTCAGGCTCCACTTCCACGATTGCTTTGTTCAAGGCTGTGACGG
ATCCATTCTTCTGGATGACGTGGGCACCAGCTTCACAGGCGAGAAGACCGCCTTCCCGAA
CGTCAACTCCGTGCGCGGCTACGACGTCATCGACCGGATCAAGTCGGCCGTGGAGCTGCT
CTGCCCCGGCGTCGTCTCCTGCGCCGACATCGTCGCCCTCGCCGCACGGGACGGCACGTT
TCTGCTAGGCGGGCCGAGCTGGACGGTGCCGCTGGGCCGGCGGGACTCGACGACGGCGAG
CCTGGCGGAGGCGAACGCCGACCTCCCAGGGCCGACGCTGAACCTCGACCAGCTCATCCG
CGCGTTCGACAAGAAAGCAGCTGACCCCGCGGGACCTGACGGCGCTCTCCGGTGCGCACA
CCATCG

Homology of Contig U35_20753 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g14430.1	328	4e-78	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g09120.1	320	2e-87
Arabidopsis v10	AT5G05340.1	324	2e-60	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324