barSeed - Barley Seed Development Database

Probe CUST_24208_PI390587928

Source Contig U35_44718

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24208_PI390587928	Hv_44K_v2	TGTACATGTGATGAATAATCGATCGAGTCTAATGACCGGGCCCGTGGTCGTGTAAACATA	31	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.207	1.222	0.970	0.984	0.718	1.015
Raw	126.239	191.292	138.717	224.268	56.478	87.341

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62018.1	2164	2e-24	2101 - 2160	100	60 / 60	plus	ABC10043 ABC42796
MLOC	AK368000	2144	7e-23	2043 - 2102	98	59 / 60	plus	ABC10043 ABC42796
JLOC1	JLOC1_40566.3	2164	8e-25	2024 - 2083	100	60 / 60	plus
JLOC1	JLOC1_40566.2	2251	8e-25	2111 - 2170	100	60 / 60	plus
JLOC1	JLOC1_40566.1	2283	8e-25	2143 - 2202	100	60 / 60	plus
Harvest21	ABC42796	592	3e-25	32 - 91	100	60 / 60	minus	ABC42796
Harvest35	U35_44718	592	3e-25	32 - 91	100	60 / 60	minus
Harvest35	U35_4825	1956	1e-23	1846 - 1905	98	59 / 60	plus

Contig Sequence (592 bp)

>U35_44718 592 Hv_44K_v2
TTTTTTTTTTTTTTTTTACAAATGTCGTCCGTATGTTTACACGACCACGGGCCCGGTCAT
TAGACTCGATCGATTATTCATCACATGTACATTTTTTTTGCGGGTACATGTACATGTGTT
GCGTATACGTAGTACGTGTGCATCCTCTACACGTACCAGACGGTCGAGACGACCACCACA
GGTCCGGTCATCTGACTCGATTATTCAGCCAGCATTCATCGCATGTACTGGTGCATGTGT
GTGTGTGTGTGTGCGCGCACGCACGCACGCACGCATTGTCCGCGACTGCACGTGTAGATA
CATCACAGTCTGCAAGTCTACACCTTGCCGTTGTTTTGCTCTTGCAGCAGCGGTTTCTCT
GGGCGTCCTGACTGATAACACACACTACTAACTGAATGCTCATCACAGCTCAAGCCGCAG
GTTCTCCTCCTCGTCGAATTCCGCCGTCAGGCGATCATCGCCATCCCCGTCGCCCTCGAA
GAAGGCCTGGTGGAGGGCTTCCACGCACAGCTTCGCCTCGCTGTCGTGGACGATCAGCGA
CATGTTCACCTTTGATGCGCCTTGCGAGATCATCTGGACATTGACCCCGATT

Homology of Contig U35_44718 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None