barSeed - Barley Seed Development Database

Probe CUST_24186_PI390587928

Source Contig U35_18457

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24186_PI390587928	Hv_44K_v2	TTCTGTTGAAATCTTCTGGCATCACCCTTAGCGAGGACCTCAAAAAGCTCAAGGAGTTTG	450	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373728	1388	7e-23	470 - 529	98	59 / 60	plus	ABC08866 ABC49253
MLOC	AK372981	2661	7e-23	1688 - 1747	98	59 / 60	plus	ABC08866 ABC49253
MLOC	MLOC_30834.2	329	7e-23	259 - 318	98	59 / 60	plus	ABC08866
MLOC	MLOC_30834.1	254	7e-23	184 - 243	98	59 / 60	plus	ABC08866
MLOC	MLOC_27403.2	523	7e-23	45 - 104	98	59 / 60	minus	ABC08866
MLOC	MLOC_27403.1	390	7e-23	45 - 104	98	59 / 60	minus	ABC08866
JLOC1	JLOC1_20347.1	254	4e-23	184 - 243	98	59 / 60	plus
JLOC1	JLOC1_18504.1	159	4e-23	53 - 112	98	59 / 60	plus
Harvest21	ABC08867	571	3e-25	451 - 510	100	60 / 60	plus
Harvest21	ABC51265	384	1e-23	78 - 137	98	59 / 60	plus
Harvest21	ABC51244	599	1e-23	260 - 319	98	59 / 60	plus
Harvest21	ABC08866	1473	1e-23	487 - 546	98	59 / 60	plus	ABC08866
Harvest35	U35_18457	572	3e-25	451 - 510	100	60 / 60	plus
Harvest35	U35_49511	384	1e-23	78 - 137	98	59 / 60	plus
Harvest35	U35_49495	599	1e-23	260 - 319	98	59 / 60	plus
Harvest35	U35_18456	1473	1e-23	487 - 546	98	59 / 60	plus

Contig Sequence (572 bp)

>U35_18457 572 Hv_44K_v2
CACCGCCGCTGTGCCCTAGAACTGCGCTGCGGCCGCCCTCTGTCCCTCACACGCCTCGTC
GCCGGCGCCCTCCCTGTCCCGTAGCGTCCCCGCTATCCCCTCCCCACCCGCAATCTTGGA
CTTCGGTTTTGAGATCTGCCCCTGCTATCGATTGTAGGTTTGCAGAGGGCTCGTCGACAT
GTCTTGGGCGCCAATCGAGAATGACCCTGGTGTTTTTACGGAGCTGTTGCAACAGTTGCA
GTTGAAGGGTCTCCAAATAAGTTATTGAACTCTACTCACTTGATCTTGATGCCCTAAATG
ATCTTCCACCAATTTATGGGCTTATATTATTGTACAAATGGCGACCTGCAGAAAAAGATG
AGCGCCCTGTTATCAAGGATGCGGTCCCAAATGTATTATTTGCTAATCAGATAATTAACA
ACGCATGTACAACCCAAGCTATTGTTTCTGTTCTGTTGAAATCTTCTGGCATCACCCTTA
GCGAGGACCTCAAAAAGCTCAAGGAGTTTGCAAAGGACATGCCGCCGGAGCTCAAAGGAT
TGGCTATAGTGAATTGTGAAAGCATTCGTATA

Homology of Contig U35_18457 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g06000.1	328	2e-55
Arabidopsis v10	None