barSeed - Barley Seed Development Database

Probe CUST_24174_PI390587928

Source Contig U35_20771

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24174_PI390587928	Hv_44K_v2	ACTGTAGAGGTCAGCCAGCAATGACGATCTGATTAATACCGTCTAAATTGAGATCATCCC	1056	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363508	2764	2e-24	2678 - 2737	100	60 / 60	plus	ABC15830
MLOC	MLOC_55471.1	1702	2e-24	459 - 518	100	60 / 60	minus	ABC15830
JLOC1	JLOC1_35790.2	1480	8e-25	943 - 1002	100	60 / 60	plus
Harvest21	ABC15830	1116	3e-25	1057 - 1116	100	60 / 60	plus	ABC15830
Harvest35	U35_20771	1116	3e-25	1057 - 1116	100	60 / 60	plus

Contig Sequence (1116 bp)

>U35_20771 1116 Hv_44K_v2
GACTTATGAAAATTGATTATCAGAAGAAGGTTGATCTATTGCATAAACAAAAGAAACGTG
GTGTTAAACTTGAAACTCTTGAGAAGACAAAGGCCGCCGTTAGCCACTTGCACACAAGCA
TGGCAAACATGTGGAGTTCTATGCACCGTCAACACAAGAGCCAGTTTTTGATCATATCGG
GGATCAGAGCTTTTGAGGTACCGCCTGTTCCAAGGGAGACAACTGATTTGCATTATAAGC
AGACCTGTGAGCTACGTGACATTGTCAGGGAGTGGCATATGCAGTTTGAGAAACTTATGG
ACCATCAAAAAGGGTACATCAGAGCACTCAATGCATGGTTGAAGCTTAATCTCATCTCCA
TCGAGAGCAATCTGAAGGAGAAAGTATCCTCCCCTCCAAGGCAGGTGGAACCACCTATCA
AGAATCTGCTATATGCCTGGCACGACCAGCTTGAGAGGCTTCCTGTTGAACTTGCCAAAA
CTGCCATTAAAAGCTTTACTGAAGTCATAAGCAATATTGTACTGCTTCAGGAAGAGGAAG
TCAGCCTAAGGCGGAGGTGTGAGGAAACTCGCAGGGATCTTGACCGTAAGAGGGCACAGT
TTGAAGACTGGCATCGTAGGTACACAGAAAGAAAGGCATCCCAGGGTGAGGAAGCTAACC
CCGAAGCAGCCAATACTTCTAGCCTAGATCATGTCAATGAGAGGAGGATAGCCATTGAGG
AAGTAGAGATCAGGTTGAAGGAAGAGGAGAGGCTCCACCTTAGGCTTGCGAGGCAGGTGA
GGGAGAAGACGCTTGCAAACCTCCGGATGCACCTGCCAGAGCTCTTCAGAAACATGACGG
ACTTTTCGTTCTTCTGCCATGACATGTACAGTAGCTTGAGAAAATCTGCAGTGCTGCAAA
TGCCCAGAGACGAGTTTCAAGGTTGATGTCTTGTGCGTGTTAGTGTTACTGTAATTTACC
TGCCACCAGAGGCAGGCAAATATTTATTTTGGTTGTAGTTGTTTGCTTGCCATTTCTAAA
CTGCGAGGCTGCTCTGAATATGTATGTTCCAAGTGCACTGTAGAGGTCAGCCAGCAATGA
CGATCTGATTAATACCGTCTAAATTGAGATCATCCC

Homology of Contig U35_20771 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g31580.1	798	8e-152	protein\|BZIP protein, putative, expressed
Brachypodium v1_2	Bradi2g13567.1	797	1e-156
Arabidopsis v10	AT5G25590.1	775	1e-83	Protein of unknown function (DUF630 and DUF632) \| chr5:8906684-8909847 REVERSE LENGTH=775