barSeed - Barley Seed Development Database

Probe CUST_24132_PI390587928

Source Contig U35_39340

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24132_PI390587928	Hv_44K_v2	GTTTCTAGCTCCTGCTCCTCGCTCGATTGTAGCTCCTTTTTCGTGGCCATGGCGGTGGAT	23	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74956.1	617	2e-24	91 - 150	100	60 / 60	plus	ABC04148
Harvest35	U35_39340	664	3e-25	24 - 83	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_39340 664 Hv_44K_v2
CCCGGGCTGCAGGTCCTGATCCCGTTTCTAGCTCCTGCTCCTCGCTCGATTGTAGCTCCT
TTTTCGTGGCCATGGCGGTGGATCTGACCCCGAGGCAGCCTACCAAGTCGTATGGCGGCG
ACGGCGGCGCCTACTACGAGTGGAGCCCGGCGGACCTGCCAATGCTCGGCGTAGCCTCCA
TCGGAGCAGCCAAACTGTCCCTCGCCGCCGGCGGCATGTCCCTCCCCAGCTACTCTGACT
CTGCAAAGGTGGCCTACGTCCTCCAAGGCAAGGGAACCTGCGGCATCGTCCTGCCCGAGG
CCACCAAGGAGAAGGTGGTTGCCGTCAAGGAAGGCGACGCTCTGGCGCTCCCCTTCGGCG
TGGTCACCTGGTGGCACAACACCCAGGAGTCTACCACGGAGCTCGTGGTCCTCTTCCTGG
GCGACACCTCCAAGGGCCACAGGCCAGGCCAGTTCACCAACTTCCAGCTCACGGGCGCCA
GCGGCATCTTCACCGGCTTCTCCACGGAGTTCGTTGGCCGCGCCTGGGACCTCAAGCAGG
ATGACGCCGCCAAGCTCGTCTCCAGCCAGCCGGCCTCCGGCATCGTCAAGCTTTCCGCTG
GGCAGAAGCTCCCGGAGCCGGTGGCTGAGGACCGTAAGGACATGGCGCTCAACTGCCTCG
AGGC

Homology of Contig U35_39340 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g02520.2	333	4e-112	protein\|cupin domain containing protein, expressed
Brachypodium v1_2	Bradi2g37470.2	304	2e-130
Arabidopsis v10	AT2G28680.1	356	9e-85	RmlC-like cupins superfamily protein \| chr2:12303118-12304747 REVERSE LENGTH=356