barSeed - Barley Seed Development Database

Probe CUST_24070_PI390587928

Source Contig U35_41681

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24070_PI390587928	Hv_44K_v2	GCGCTGCAATGATAGCAAGTACTACTACAATTTTCTGTTAAATGGTTCCGCAAAATTATT	72	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63275.1	1965	2e-24	2 - 61	100	60 / 60	minus	ABC01373 ABC01385 ABC17092
JLOC1	JLOC1_41435.1	2280	8e-25	2072 - 2131	100	60 / 60	plus
Harvest21	ABC01373	1809	3e-25	1678 - 1737	100	60 / 60	plus	ABC01373
Harvest35	U35_41681	584	3e-25	73 - 132	100	60 / 60	minus

Contig Sequence (584 bp)

>U35_41681 584 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGACAAAACGCCATAATTATGTTATTCAGAAAATAAATTTACA
GAAGCTGAAGAAAATAATTTTGCGGAACCATTTAACAGAAAATTGTAGTAGTACTTGCTA
TCATTGCAGCGCAACAGCTCAAGTCTTAAAAAGACACAGCAAAATTTTGGTTACAAACTC
CCCCTAATAAATCAACCTATAATAGCAGTTTTACTCGAATCATAATAGTACTACTATATT
GGATCGGTAGCTTGGATTTTGGACGCTGTTGATTTTGCACTAGCAGACGCCGTTGGTCTT
CTTGGCGAGCACAAACTCCTTCCATGCCGCCGCCACGGACTTCTGCGTCTCGAGCTCCGT
CTTCTTGGCGACGGTCTTGGGCAGCGTGGCCGGCAGCAGCCCCAGGGCGGGGGGCGTGAG
CTTGGAGGGGAGCACGTCGAGCTGGGCCATGACGGTTGTCGATGTCGATGACGAGGCGCT
CGGCGAGGGTGCGGCTGAACTCCTCCCGGATGACGACGCGGAGCACGGGTGACGTGCTGC
GCGTCGGCCGGCATGGTGTAGGCCGGCACGATCCAGCCGAAGCG

Homology of Contig U35_41681 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None