barSeed - Barley Seed Development Database

Probe CUST_24069_PI390587928

Source Contig U35_27390

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24069_PI390587928	Hv_44K_v2	AAAGGAGAACCTATATGTGTTGTTTATCCTTTGGTTAGTTAGTAGTGAGTTGGATGGATT	601	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51468.1	723	3e-22	15 - 73	98	59 / 60	minus	ABC18413 ABC40315
JLOC1	JLOC1_32884.1	847	1e-22	655 - 713	98	59 / 60	plus
Harvest21	ABC24820	664	3e-25	602 - 661	100	60 / 60	plus
Harvest35	U35_27390	664	3e-25	602 - 661	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_27390 664 Hv_44K_v2
CCGCAGCCGAGGCCTCCGTCGCCCTCGCCGTCCGCGCCCCGGCCTGCCGCGCCGCCGCCC
GCCCCCAGCCAGAATGTCTCCCTGCCCGCGCCATCCTTTGACCTACCAGACATTGCGGAT
CTTTTTGATTCCCCCTCTCTCCCCAACAGAGGTTCTGCTGGTATCATGGGAAGTTCATCA
AGGAAAAGAGAATCAAATGGATCAGCTATTCAAGATCCACGTAGTAAATTTCCGAGGGCA
CAGTCAGCACAATCTCGTGGTGCCAGGAATGCTGCTGCGAGCACATTAGTTCCGCCACAG
CTTAGTGGAAGGAGTAACGTTGTTACTGAAGATATGGGCAAACTGTTTGTGGCAAGACGC
AAAGATTAGCTCTAAGTATCACTCTATTAACATCTACCTGGATCCAAATGACACATCTAT
TGGCTCCCATTGACAGACGTGCATGATTGAGGAATGATCGTAACTGAAGAGACCGGGCAT
GCTCTTTTCCGCGACGTCTGTTTGATGCCTGTTTCTTTGGTGCTCACCTGCAACAGCAGT
ACTTGCATGCTCTGTAGTAGCATGTACCTCTTTTAAGACAATCGTGTATCATTCTACTCT
GAAAGGAGAACCTATATGTGTTGTTTATCCTTTGGTTAGTTAGTAGTGAGTTGGATGGAT
TATC

Homology of Contig U35_27390 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g60370.1	166	1e-51
Arabidopsis v10	None