barSeed - Barley Seed Development Database

Probe CUST_24053_PI390587928

Source Contig U35_39372

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24053_PI390587928	Hv_44K_v2	GTTTCGATAGCAGATCAAAGACTTAAGCATGGAGAAGTTTGCTGATAATTGAGAATCAAT	41	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365985	2341	9e-22	1897 - 1954	98	57 / 58	plus	ABC04183
Harvest35	U35_39372	770	3e-25	42 - 101	100	60 / 60	minus

Contig Sequence (770 bp)

>U35_39372 770 Hv_44K_v2
TTTTTTTTTTTTTTTTTACTGCAAACCTTCTTCAATTAACTATTGATTCTCAATTATCAG
CAAACTTCTCCATGCTTAAGTCTTTGATCTGCTATCGAAACTCTCCTACTTCTACCCACA
ACAAAGTGACAGTTTCGTAACCATTAACAGCAGAACATTGCTTGAAAGGTATAGGTAATA
GAAGCATCAAGAAGGTCATCACAGCTAGAATTAATAAGCATGGACCAGGCTCGCTCTTAG
AGGAAGAGAGATCATGGGCTCAGCCTCTGCGGGTCACGAGGGAAAAGCGATGCCATTCGG
ATGTCGTCCAGTCCGCAGAACAGCTTCACCACCCTCTCCAACCCGATCCCAAACCCGCCA
TGAGGAGGTGTGCCGTAGCTAAATGATTCCAGGTATGACTTGATAGAACTCTTGTCGATT
CCATGCTCAGCCACACGTTTGGCCAGCAGCTCGGGTTCATGTATTCTTTGTGCTCCGGAA
ATTATTTCCTCGCCTCGAAGGAAGACATCAAAAGAGTTGCTGTAAGCTGGGTTTTCATAA
CAAGGCATGGTGTAGAAGGGGCGTGCCGCCAAAGGATACCGATAGAGAATGAAAAAATCA
GTGTCATACTTCTCCCTAACAAGCTGACCAAGTTTTCTCTCAGCTTCAGTGTTGAGGTCA
CCCATANNGCTCACTTCTGTTCCAGCTTCCTTCAACATTTGTATTCCTTCCTCATAACTG
AGCCTCANGGTATTCTCTANGTACTTCAGTGGTTCAAATGGATACTGCCT

Homology of Contig U35_39372 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g46130.1	550	9e-95	protein\|tRNA synthetases class II domain containing protein, expressed
Brachypodium v1_2	Bradi4g07267.1	540	9e-98
Arabidopsis v10	AT4G31180.1	558	2e-82	Class II aminoacyl-tRNA and biotin synthetases superfamily protein \| chr4:15156696-15159362 FORWARD LENGTH=558