barSeed - Barley Seed Development Database

Probe CUST_24045_PI390587928

Source Contig U35_41695

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24045_PI390587928	Hv_44K_v2	ATAAAGGCACCAGTTCAAGTATCGAAGAGACCTACGGCTTTTGGTGCTCTGTTAGGAAAA	28	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365664	2980	7e-23	2058 - 2117	98	59 / 60	plus	ABC20254 ABC36800
MLOC	MLOC_55357.4	1831	7e-23	703 - 762	98	59 / 60	minus	ABC20254 ABC36800
MLOC	MLOC_55357.1	1927	7e-23	881 - 940	98	59 / 60	minus	ABC20254 ABC36800
JLOC1	JLOC1_35698.1	2928	4e-23	1977 - 2036	98	59 / 60	plus
Harvest21	ABC36800	545	3e-25	29 - 88	100	60 / 60	minus	ABC36800
Harvest35	U35_41695	545	3e-25	29 - 88	100	60 / 60	minus

Contig Sequence (545 bp)

>U35_41695 545 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCGGAAGAGGGTTTTCCTAACAGAGCACCAAAAGCCGTAGGTC
TCTTCGATACTTGAACTGGTGCCTTTATTACTTGCTGCTGACCACTATTGCTCGGTATCA
CTGTATCTGCTTGCCCAGTAGCGCCTGGCAACGCCCCAAAGCTCTTGGTTTCAGGTGTGA
CGTTATCTAGTTGCAAATTACCTAAAGAAGCTCCGCTCGTAACATTCCCAGTACAGAAAG
AAGTATGGATGTTTGTAATCACTGGGGGAGCTACAACAGGTTCAATCAGCTGAAGATTAC
TTTCATTACTATCAGCATCGACGGCAGAAATCATTTCAGTGTCTTCAGCGCCGTCCTTCA
CTTCTGCCACCATTAACTCTTCCAGCCTTCCTTTCTTCAGTTGCTCAGCTATACTTTCAA
AAGCATCGGCATTTGCGACAGCATTCCTTATGGTAGTAATGACATGTCCGAGATAGTGCT
CAAGAAATTTATTTTTTGACTTAACTGTTCTTTTTAACCTCCCAGTGGTCACAGGCATCT
GCTTG

Homology of Contig U35_41695 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g30100.1	903	3e-56	protein\|3-5 exonuclease family protein, putative, expressed
Brachypodium v1_2	Bradi3g27252.1	907	5e-69
Arabidopsis v10	None