barSeed - Barley Seed Development Database

Probe CUST_24040_PI390587928

Source Contig U35_39380

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24040_PI390587928	Hv_44K_v2	CCAACCGGGAGATTAGAGACTGTACTTTGTTAATTTTCTCTAGTCTTTATTACTCCTTTT	106	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372534	1162	2e-24	1036 - 1095	100	60 / 60	plus	ABC14337 ABC35495
MLOC	MLOC_59184.1	1017	2e-24	719 - 778	100	60 / 60	plus	ABC35495
JLOC1	JLOC1_38499.1	1214	8e-25	939 - 998	100	60 / 60	plus
Harvest21	ABC35495	626	3e-25	107 - 166	100	60 / 60	minus	ABC35495
Harvest35	U35_39380	626	3e-25	107 - 166	100	60 / 60	minus

Contig Sequence (626 bp)

>U35_39380 626 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACTTATAGACTGTTCATATTTCTATACCTCTTATTTCATCCA
TATTATATATAAGAGCCATAAACAGACGGTGAAAAGAAACAGTGTTAAAAGGAGTAATAA
AGACTAGAGAAAATTAACAAAGTACAGTCTCTAATCTCCCGGTTGGTTGGGTTGGTCTCG
CCCGTGTGTAGAAACGAAACAATATATACGACAATTGCTAGATCAGAAAGGCCTTCTGCT
CAGAAGTACTCGAGGTTGAAGTCAAAATGCGCCATGCTGTGCTCTTGCTGGCCGTGGCAG
GGCAGCGCGAACTTGTCGTCGTCACCGCCGGCGTAGCCGACGAATGGCTCCACCTTGCTC
TCCGAGGCCCAATGCAGCGCCTCGCCCTCCAGCGCGTTGTTCGCCTCCGGCGCGCTGTTC
CAGTTGCTGCTGTTGCTGGAGCTCTCGCCGTAGCCCAGGTTCTCCGACACGTCCAGCACG
CTGCTGTAGTCCACGAACCCGACCGCGTCCTTGCCGCCGAGGTGGTCGTACAGCGGCATG
CCCGCCCCGTCGAAGCCGGCCCCGAAGGTGTCGGCCGCCGGGAAAGGGTCGAAAACCTGC
AGCTGCTGCTGCTTCAGGGCACCGTC

Homology of Contig U35_39380 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None