barSeed - Barley Seed Development Database

Probe CUST_24018_PI390587928

Source Contig U35_27524

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24018_PI390587928	Hv_44K_v2	CCAAATGTGTAGGCATGATCAAAGATGGGTGACCTAAATCATGTGATTCTGGCTGTACGT	915	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15580.2	1500	7e-23	1278 - 1337	98	59 / 60	plus	ABC06920
MLOC	MLOC_15580.1	1643	7e-23	1357 - 1416	98	59 / 60	plus	ABC06920
JLOC1	JLOC1_10700.1	1583	4e-23	1317 - 1376	98	59 / 60	plus
Harvest21	ABC22475	975	3e-25	916 - 975	100	60 / 60	plus
Harvest35	U35_27524	975	3e-25	916 - 975	100	60 / 60	plus

Contig Sequence (975 bp)

>U35_27524 975 Hv_44K_v2
TTTTCGTCGCGCTCTTCTACATCCTGTTTGGCTCCATAGAGGTCATCTACCTCTCTTCCA
TACTGTCGAAATTTATCGAGGGCGGGTACCTCCCCATCTGCTTCGCACTGGTCGTGATGA
GCCTGATGGCGGCATGGCACTACGTCCAAGTCAAGAGGTACTGGTACGAGCTCGATCACA
TCGTGCCTACTAGTGAATTGTCGGTGCTACTCAAGAAGAACGATGTGAGGAGGATCCCAG
GGGTTGGCCTCCTCTACACGGAGCTGGTCCAGGGCATACCTCCAGTGTTCCCTCGGCTGA
TCGAGAGGATACCATCCGTGCACTCCATCTTCATGTTCATGTCCATCAAGCACCTGCCTA
TCCCACGTGTCCTGCCCGCAGAGAGGTTTCTCTTCCGGCAGGTCGGCCCGAGGGAGCAGC
GGATGTTCCGCTGCGTGGCGCGGTATGGATATAGTGACACGCTGGAGGAGCCCAAGGAGT
TTGTGATCTTTCTCATGAATGGGCTCAAGATGTTCATTCAAGAGGAGAGCGCATTCGCAC
ACAACGAAGTGGCTGTGATCGCCACTGGTGGTGAAGTTTCAGGACGATCCACAAGCAATG
TAGTGCACAGCGAGGAGGTGGTCCAAGCCAGGGTGAGCAGCCACTCGTCGGGGAGGATCG
GTAGCTTCCATTCCAACCGGACAGTCGAGGAGGAGAAGGAACTGATCGACAAAGAGGTGG
AACACGGGATGGTGTATCTGATGGGTGAGGCCAATGTCAGCGCCAAAGCCAACTCCTCGG
TGTTCAAGAAGATGGTGGTCAACTATGTTTACACGTTCTTGAGGAAGAACTTGACGGAGG
GGCACAAGGCACTAGCCATTCCGAAAGATCAGTTGCTCAAAGTTGGGGTCACATATGAGA
TATAGTGATTTTACCCCAAATGTGTAGGCATGATCAAAGATGGGTGACCTAAATCATGTG
ATTCTGGCTGTACGT

Homology of Contig U35_27524 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g32920.4	793	2e-128	protein\|potassium transporter, putative, expressed
Brachypodium v1_2	Bradi5g08520.1	676	9e-158
Arabidopsis v10	AT4G13420.1	785	2e-79	\| Symbols: HAK5, ATHAK5 \| high affinity K+ transporter 5 \| chr4:7797038-7802174 REVERSE LENGTH=785