barSeed - Barley Seed Development Database

Probe CUST_23997_PI390587928

Source Contig U35_15557

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23997_PI390587928	Hv_44K_v2	CTATATTTACATCATGCCAAAGAATATCTTGAAGCTCATACGCATAGCAGATCTACGGAC	237	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75371.1	1688	2e-24	866 - 925	100	60 / 60	minus	ABC03729 ABC03730 ABC03734
MLOC	MLOC_75371.2	1437	2e-24	866 - 925	100	60 / 60	minus	ABC03729 ABC03730 ABC03734
JLOC1	JLOC1_50277.1	604	8e-25	215 - 274	100	60 / 60	plus
Harvest21	ABC03729	864	3e-25	238 - 297	100	60 / 60	plus	ABC03729
Harvest35	U35_15557	864	3e-25	238 - 297	100	60 / 60	plus

Contig Sequence (864 bp)

>U35_15557 864 Hv_44K_v2
GCTCCCCCGCCGCCTCCCATCCCCTTTCTCTCGCACAGCCGGCGTCAGATTCCGTCGCGG
TCCGCCACTCCGGCCGCCGCCTAGCACGGCCACGACCACGGGCTGATTTACCACTTCCAC
CATATGGATTCGGTCTTCCCCGCCACCACCGCTCGCGCGCCGTACTAGGGTTTCCGGCTG
CTCCATGGACAAGCAGCTGCAGCTCCTCCCCAACACAACCGCTGCTAGGGAGACTGGCTA
TATTTACATCATGCCAAAGAATATCTTGAAGCTCATACGCATAGCAGATCTACGGACACA
GGTTGCGGGTTTCCTTTATGGGCTGAGTCCACAGGATAATCCCCAACCAAGGAGATCAGA
TGCATATCGATTCCCCCACAGCATGGAACTCACCAGATGGCGGCTCTTCCAGCGAATCTT
CGGGAGCATGAGTTCCTTGCTGACTTCGAGCCATTGGGATGGATGCATACCCAGCCAAAT
GAAGCTCCTCGGCTATCACCCCAGGTTCCGGACAATGCTCCCTGGAACAACAACTTCATG
GGAGTGAAGCACGGCCCACAGATGAAGTACATTATGAAGTTGGGGACGCCTCGAGACTTG
TACCATGAGGACCACAGTGACATGGATGAAGTTCGTAAGACACCATGCTGTAGCGCGCCC
TCCACCCTGTCTTTTAACACATGGAGACCTACAGTGAATTCTTGGCAGTTTTGAATAGAG
AGATCCCTGTAACTCGTAACTTTGACCTGCAATGAAGTATTCAAAGTTTCGAATACAGAT
TGTATGCTTTCTGTTGTAAGCCTCCCCCTTCATGCGGGATGATGTATATACTCCCTCCGT
TCGGAATTAAAAAAAAAAAAAAAA

Homology of Contig U35_15557 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None