barSeed - Barley Seed Development Database

Probe ABC03734

Source Contig ABC03734

barSeed

Links

Affymetrix Source Sequence (2403 bp)

>ABC03734 2403
GTGCAGATGTCCTCCTTTTTGCTGCACATAGGTGGCAGATGTCCAAACCAAGCTTAGTTT
CCGAGTCAAAGGATGTTTTTGATCAGAAAGCGAGTAACAAGTACTGGATTGATGTGCAAC
TACGATGGGGAGACTATGATTCACATGACATAGAACGTTATACAAGAGCAAAATTTATGG
ACTACACGACAGATAATATGTCCATCTACCCTTCTCCGACTGGAGTGATGATTGGACTTG
ATCTAGCTTATAATTTGCACTCGGCCTTTGGCAACTGGTTCCCTGGGTCAAAGCCCCTCC
TCCAGCAAGCAATGAACAAGATCATGAAGTCAAATCCTGCTCTGTATGTGCTGAGAGAGA
GAATAAGAAAGGGTCTTCAGCTGTATTCATCTGAACCCACCGAGCCATATCTGTCTTCAC
AGAACTATGGAGAGATATTCAGCAATCAAATCATATGGTTTGTGGATGACACGAATGTCT
ATCGAGTTACCATTCACAAAACCTTCGAGGGTAACCTGACCACCAAACCAATCAATGGTG
CTATCTTTATTTTCAATCCAAGAACTGGGCAACTATTTCTGAAGGTTATCCACACAAGTG
TATGGGCAGGACAAAAGCGTCTAGGGCAGCTGGCCAAGTGGAAAACTGCCGAGGAGGTTG
CTGCATTAGTTCGGTCTCTTCCTGTAGAAGAGCAGCCAAAGCAAATTATTGTGACAAGGA
AGGGTATGTTGGATCCATTGGAAGTCCATTTGCTTGATTTCCCTAACATTGTTATCAAGG
GTAGTGAGTTGCAGCTGCCATTCCAAGCTTGCTTGAAGATTGAGAAGTTTGGTGATCTTA
TTCTCAAGGCTACGGAACCACAGATGGTTCTTTATAACATATACGATGACTGGCTGAAAA
GTATCTCGTCCTACACCGCATTCTCTCGTCTTGTGCTTATATTACGAGCATTACATGTCA
ATAATGAGAAGGCTAAGATGTTGCTGAAGCCTGACAAGACAATTGTTACGGAACCACATC
ATATCTGGCCATCTTTGACTGACGAGCAGTGGCTGAAGGTCGAATGTGCGCTCAGGGATC
TCATTCTTTCTGATTATGCGAAGAAAAACAACGTTAATACTTCTGCACTTACGCAATCTG
AGATTCGTGATATAATACTGGGTGCTGAAATAGCTCCACCGTCACAGCAGAGGCAACAGA
TAGCTGAGATTGAGAAACAGTCCCGAGAGACAAATCAGGTAACTGCACAGACAACAAGGA
CAGTTAATGTGCATGGAGATGAGCTCATTGTCACAACAACCAGTCCGTATGAGCAAGCAG
CATTTGCATCGAAGACAGATTGGCGTGTCAGGGCCATCTCTGCTACGAACCTGTATCTCC
GTGTCAACCACATTTATGTTAACTCAGATGATATAAAGGAGACTGGCTATACTTACATCA
TGCCAAAGAATATATTGAAGAAGTTCATATGCATAGCAGATCTACGGACACAGGTTGCAG
GTTTTCTGTATGGGCTGAGTCCACAGGATAATCCCCAAGTCAAGGAGATCAGATGCATAT
CCATTCCGCCACAGCATGGAACTCACCAGATGGTCACTTTGCCAGCGAATCTCCCAGAGC
ATGAGTTCCTTGCTGACTTGGAGCCGTTGGGATGGATGCATACCCAGCCAAATGAAGCTC
CTCAGCTATCACCTCAGGATTTGACATCACATGCTAAAATTTTGGAGAACAACAAGCAGT
GGGATGGTGAGAAGTGCATCATTTTGACCTGCAGCTTCACCCCAGGATCGTGCTCGTTGA
CTGCATACAAATTGACACCAAGTGGTTATGAGTGGGCCCGTGGCAACAAGGACAACGGGA
GCAACCCACAAGGTTATCTTCCAACTCACTACGAGAAGGTCCAGATGCTTCTCAGCGACC
GCTTCCTTGGATTCTACATGGTTCCGGACAACGCTCCGTGGAACTACAACTTCATGGGAG
TCAAGCACGACCCGCTGATGAAGTACAGCATGAAGCTGGGCACACCCCGCGACTTCTACC
ACGAGGACCACAGGCCAACACACTTCCTGGAGTTCAGCAACATTGAGGAGGGCGAGGTTG
CTGAGGGGGACAGGGAGGACACCTTCTCGTAGTCGTAGCCACCTTAGCACGCCCACTCCG
CCCTATGTTAGCGTATCGAAACCTGCAATGAGCTCTGCTCAGTTTTGAATAGAGAGCTCT
GTGACGTGTGTAACTTTGACGTGACATGTTGTATGATGTTTTCCGTCTCTTGAGACTAAT
ACCTTGTATTGTAAGCCTGCCCTTCAAGCACGGTGCTGTACAAGTGCATCATGATAACAG
TTGAAACATTTTGCTTGGTGGCCTGTAGATGCCATCGTGTAACTTTAAAAAAAAAAAAAA
AAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_39065.1	1830	0.0	6 - 1809	99	1794 / 1804	CUST_23995_PI390587928	ABC03729 ABC03730 ABC03732 ABC03734
MLOC_66513.1	6720	0.0	176 - 1877	94	1598 / 1704	None	ABC03729 ABC03730 ABC03734
MLOC_66513.2	6516	0.0	3 - 1676	93	1572 / 1699	None	ABC03729 ABC03730 ABC03734
MLOC_44147.1	5201	0.0	4757 - 5201	99	444 / 445	CUST_23972_PI390587928	ABC03734
MLOC_19165.1	921	0.0	243 - 906	86	577 / 674	None	ABC03730 ABC03732 ABC03734
MLOC_3933.1	352	2e-173	1 - 352	98	345 / 352	None	ABC03734
MLOC_45190.1	259	3e-122	3 - 259	98	251 / 257	None	ABC03734
MLOC_44147.2	5227	1e-81	5062 - 5227	100	166 / 166	CUST_23972_PI390587928	ABC03734
MLOC_75371.1	1688	1e-101	658 - 935	91	256 / 282	CUST_23997_PI390587928	ABC03729 ABC03730 ABC03734
MLOC_75371.2	1437	2e-100	658 - 933	91	254 / 280	CUST_23997_PI390587928	ABC03729 ABC03730 ABC03734