barSeed - Barley Seed Development Database

Probe CUST_23995_PI390587928

Source Contig U35_15558

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23995_PI390587928	Hv_44K_v2	GTGCATCATGATAACAGTTGAAACATTTTGCTTGGTGGCCTGTAGATGCCATCGTGTAAA	2928	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39065.1	1830	3e-22	1747 - 1805	98	58 / 59	plus	ABC03729 ABC03730 ABC03732 ABC03734
JLOC1	JLOC1_25452.1	1925	1e-22	1827 - 1885	98	58 / 59	plus
Harvest21	ABC03732	460	3e-25	387 - 446	100	60 / 60	plus	ABC03732
Harvest21	ABC03734	2403	1e-24	2324 - 2382	100	59 / 59	plus	ABC03734
Harvest35	U35_15558	3060	3e-25	2929 - 2988	100	60 / 60	plus

Contig Sequence (3060 bp)

>U35_15558 3060 Hv_44K_v2
GAAAGACCGCCACACTTTGGCATATGACAAAGGATGGAGGGTCAGAACAGACTTCAAGCA
GTATCAAGTGCTGAAACAAAACCCATTCTGGTGGACACATCAGCGCCATGATGGAAAGCT
ATGGAACTTAAACAACTACAGAACTGACGTCATCCAAGCACTCGGAGGTGTGGAAGGTAT
CCTGGAGCATACCTTATTTAAAGGAACATATTTCCCTACCTGGGAGGGTCTGTTCTGGGA
GAAGGCTTCAGGTTTTGAGGAATCAATGAAGTACAAAAAACTGACAAATGCGCAGCGTTC
TGGGCTTAACCAAATCCCCAATAGAAGATTTACCCTTTGGTGGTCACCAACCATTAATCG
TGCAAATGTATATGTTGGTTTCCAGGTTCAGCTAGATCTGACTGGGATATTCATGCATGG
TAAAATTCCAACCCTGAAGATCTCTCTGATTCAGATTTTCCGTGCACATCTTTGGCAGAA
GGTCCATGAAAGTGTTGTTATGGATCTTTGCCAAGTTCTGGATCAGGAGTTGGATGCACT
GGAGATTGAGACAGTACAGAAGGAGACAATACATCCCAGGAAGAGTTACAAGATGAACAG
TTCATGTGCAGATGTCCTCCTTTTTGCTGCACATAGGTGGCAGATGTCCAAACCAAGCTT
AGTTTCCGAGTCAAAGGATGTTTTTGATCAGAAAGCGAGTAACAAGTACTGGATTGATGT
GCAACTACGATGGGGAGACTATGATTCACATGACATAGAACGTTATACAAGAGCAAAATT
TATGGACTACACGACAGATAATATGTCCATCTACCCTTCTCCGACTGGAGTGATGATTGG
ACTTGATCTAGCTTATAATTTGCACTCGGCCTTTGGCAACTGGTTCCCTGGGTCAAAGCC
CCTCCTCCAGCAAGCAATGAACAAGATCATGAAGTCAAATCCTGCTCTGTATGTGCTGAG
AGAGAGAATAAGAAAGGGTCTTCAGCTGTATTCATCTGAACCCACCGAGCCATATCTGTC
TTCACAGAACTATGGAGAGATATTCAGCAATCAAATCATATGGTTTGTGGATGACACGAA
TGTCTATCGAGTTACCATTCACAAAACCTTCGAGGGTAACCTGACCACCAAACCAATCAA
TGGTGCTATCTTTATTTTCAATCCAAGAACTGGGCAACTATTTCTGAAGGTTATCCACAC
AAGTGTATGGGCAGGACAAAAGCGTCTAGGGCAGCTGGCCAAGTGGAAAACTGCCGAGGA
GGTTGCTGCATTAGTTCGGTCTCTTCCTGTAGAAGAGCAGCCAAAGCAAATTATTGTGAC
AAGGAAGGGTATGTTGGATCCATTGGAAGTCCATTTGCTTGATTTCCCTAACATTGTTAT
CAAGGGTAGTGAGTTGCAGCTGCCATTCCAAGCTTGCTTGAAGATTGAGAAGTTTGGTGA
TCTTATTCTCAAGGCTACGGAACCACAGATGGTTCTTTATAACATATACGATGACTGGCT
GAAAAGTATCTCGTCCTACACCGCATTCTCTCGTCTTGTGCTTATATTACGAGCATTACA
TGTCAATAATGAGAAGGCTAAGATGTTGCTGAAGCCTGACAAGACAATTGTTACGGAACC
ACATCATATCTGGCCATCTTTGACTGACGAGCAGTGGCTGAAGGTCGAATGTGCGCTCAG
GGATCTCATTCTTTCTGATTATGCGAAGAAAAACAACGTTAATACTTCTGCACTTACGCA
ATCTGAGATTCGTGATATAATACTGGGTGCTGAAATAGCTCCACCGTCACAGCAGAGGCA
ACAGATAGCTGAGATTGAGAAACAGTCCCGAGAGACAAATCAGGTAACTGCACAGACAAC
AAGGACAGTTAATGTGCATGGAGATGAGCTCATTGTCACAACAACCAGTCCGTATGAGCA
AGCAGCATTTGCATCGAAGACAGATTGGCGTGTCAGGGCCATCTCTGCTACGAACCTGTA
TCTCCGTGTCAACCACATTTATGTTAACTCAGATGATATAAAGGAGACTGGCTATACTTA
CATCATGCCAAAGAATATATTGAAGAAGTTCATATGCATAGCAGATCTACGGACACAGGT
TGCAGGTTTTCTGTATGGGCTGAGTCCACAGGATAATCCCCAAGTCAAGGAGATCAGATG
CATATCCATTCCGCCACAGCATGGAACTCACCAGATGGTCACTTTGCCAGCGAATCTCCC
AGAGCATGAGTTCCTTGCTGACTTGGAGCCGTTGGGATGGATGCATACCCAGCCAAATGA
AGCTCCTCAGCTATCACCTCAGGATTTGACATCACATGCTAAAATTTTGGAGAACAACAA
GCAGTGGGATGGTGAGAAGTGCATCATTTTGACCTGCAGCTTCACCCCAGGATCGTGCTC
GTTGACTGCATACAAATTGACACCAAGTGGTTATGAGTGGGCCCGTGGCAACAAGGACAA
CGGGAGCAACCCACAAGGTTATCTTCCAACTCACTACGAGAAGGTCCAGATGCTTCTCAG
CGACCGCTTCCTTGGATTCTACATGGTTCCGGACAACGCTCCGTGGAACTACAACTTCAT
GGGAGTCAAGCACGACCCGCTGATGAAGTACAGCATGAAGCTGGGCACACCCCGCGACTT
CTACCACGAGGACCACAGGCCAACACACTTCCTGGAGTTCAGCAACATTGAGGAGGGCGA
GGTTGCTGAGGGGGACAGGGAGGACACCTTCTCGTAGTCGTAGCCACCTTAGCACGCCCA
CTCCGCCCTATGTTAGCGTATCGAAACCTGCAATGAGCTCTGCTCAGTTTTGAATAGAGA
GCTCTGTGACGTGTGTAACTTTGACGTGACATGTTGTATGATGTTTTCCGTCTCTTGAGA
CTAATACCTTGTATTGTAAGCCTGCCCTTCAAGCACGGTGCTGTACAAGTGCATCATGAT
AACAGTTGAAACATTTTGCTTGGTGGCCTGTAGATGCCATCGTGTAAAAAAAAAAAAAAA
AAGTTTTTTCCTTGGCCTTGACCCCTTTCAAAAAAAGAAAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_15558 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g07050.1	2351	protein\|pre-mRNA-processing-splicing factor 8, putative, expressed
Brachypodium v1_2	Bradi1g48264.1	2351
Arabidopsis v10	AT1G80070.1	2359	\| Symbols: SUS2, EMB33, EMB177, EMB14 \| Pre-mRNA-processing-splicing factor \| chr1:30118052-30127574 FORWARD LENGTH=2359