barSeed - Barley Seed Development Database

Probe CUST_23991_PI390587928

Source Contig U35_41823

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23991_PI390587928	Hv_44K_v2	GGTAAATTTGCATGCACTCATTTACTGTTGATTTTCTAACTTGCGCTTGAAATGCTTGCT	20	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21796.1	415	2e-24	272 - 331	100	60 / 60	plus	ABC01072
JLOC1	JLOC1_15111.1	386	8e-25	272 - 331	100	60 / 60	plus
Harvest21	ABC37061	449	3e-25	21 - 80	100	60 / 60	minus
Harvest35	U35_41823	449	3e-25	21 - 80	100	60 / 60	minus

Contig Sequence (449 bp)

>U35_41823 449 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCAAGCAAGCATTTCAAGCGCAAGTTAGAAAATCAACAGTAAA
TGAGTGCATGCAAATTTACCGGATGTTCGCTTATTCATTACTAAATAATACTGCTATACC
AGCAACTGTTTAAACCAACACATGACTCGATAGTTCATCAAACAAACACAATAGGACTGA
CACGAACGAGATAACAGTTCAATGATCCGCCGGACGAACGACCACCAGGATGTCCAACGC
CAGGGCAATTACTGACCACCACCAGGATGTCCAACGCCAGGGCAATTACTGACCACCACG
GAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTGCG
GCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGGATGCCCTC
CTTGTCCTGGATCTTGGCCTTGACGTTGT

Homology of Contig U35_41823 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None