barSeed - Barley Seed Development Database

Probe CUST_23983_PI390587928

Source Contig U35_41829

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23983_PI390587928	Hv_44K_v2	CAGCGAGGAGTGAGCTACCACATGATTCGACTAATCATGAGGACATAGATAGCATTGATT	442	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365477	2239	2e-24	961 - 1020	100	60 / 60	plus	ABC06958
MLOC	MLOC_44274.2	1481	2e-24	1289 - 1348	100	60 / 60	minus	None
MLOC	MLOC_44274.3	1307	2e-24	1136 - 1195	100	60 / 60	minus	None
MLOC	MLOC_44274.1	1483	2e-24	1315 - 1374	100	60 / 60	minus	None
JLOC1	JLOC1_28678.1	1461	8e-25	113 - 172	100	60 / 60	plus
Harvest21	ABC37072	502	3e-25	443 - 502	100	60 / 60	plus
Harvest35	U35_41829	502	3e-25	443 - 502	100	60 / 60	plus

Contig Sequence (502 bp)

>U35_41829 502 Hv_44K_v2
GCTACCAACTACGCGGCGGCAAACTCGTCCAGGCGGTTCGCCACGGGGGAGGAGGCCTTC
GACACCAGTAACCCCACCATCTACGGGCTCGTGCAGTGCACGCCCGACATGTCACAGGCC
GATTGCCGGAGCTGCCTCGGAGACATAATTACGCAGATGCCGCAGGATCTCAGCGGGAGC
ATAGGCGGGAGGATGATTGGGGTGCGGTGCAATTTCAGGTACGAGGTTGTCCCTTTCTTC
TCCGGAAGCCCGACCCTGCGGTTGCCAGCACCTCCAGCGCCGCCGGCTCCTCCTCCTGCG
ACTGTTAACGTCACGCCGACGGCGACCCCACGAGGAAAATCGGCAAACAATATTCTGGCT
ATTGCGCTGCCTATAGTTGCTGCAATTCTGGCTATCACTACTGTTTGCCTTTGTTATTTA
AGGAGGAGGAGAAGGAGAAGACCAGCGAGGAGTGAGCTACCACATGATTCGACTAATCAT
GAGGACATAGATAGCATTGATT

Homology of Contig U35_41829 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None