barSeed - Barley Seed Development Database

Probe CUST_23923_PI390587928

Source Contig U35_19779

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23923_PI390587928	Hv_44K_v2	AGGAACATCGTCTGATTTGTTTTTTCAGAGGCGGTGCCTCGTTTCCTTGCAAATTCAGAT	704	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367352	1065	2e-24	829 - 888	100	60 / 60	plus	ABC12520
MLOC	MLOC_54549.1	910	2e-24	66 - 125	100	60 / 60	minus	ABC12520
JLOC1	JLOC1_35114.2	1072	8e-25	802 - 861	100	60 / 60	plus
JLOC1	JLOC1_35114.1	704	8e-25	434 - 493	100	60 / 60	plus
Harvest35	U35_19779	798	3e-25	705 - 764	100	60 / 60	plus

Contig Sequence (798 bp)

>U35_19779 798 Hv_44K_v2
GCCAGCCAGCCAGCCAGAGAGCGATTCGCCGCCGCCGCCGCCGCCGCCGTCAAGCCTCCA
GGGAGCGAGCCCCTCCGTCCACAAGACAGCCTCGCACCACCGGCCCCCGTCCCGCGCTCC
CTCACGGGCACCGCGTCTTCCGCGAGAACCGCGCCCGCCTAGCTAGCCAGGGTGTCCGCC
ACCGCCGGAGAGGGGAAGGGGAGGACCAGAACCAGAGCGCGATGGCCGGACGGCTCCTCG
GCCAACTCCTCGTCATGGGCGGCGCCGTCGTCGGCAGGGCCGTGGTGCAGGCCTACCGCC
AGGCCATCGTCAATGCACAGAGAACCGGAGCTGCACAGGAAGCTGTGAACGGTATTCGAA
GGGCTAGCAAGGCCATGACTGAGCAAGAAGCCCGGCAAATATTGGGTATCAGTGAAAAGA
CGAGTTGGGAAGAGATCGTGCAGAAGTATGATACGATGTTTGAGAAGAACGCCAAGAGTG
GAAGCTTCTATCTCCAGTCGAAAGTACACCGGGCCAAAGAATGTCTGGAGTCTATACACC
ATGATAAGCCCGACATAATGAACTGAGATGGCCAGTGTTTCGTCCAATCTATTGATTTTG
TCATTGATGTTCTGTCCATGCTATGCTGGGTTGCTGCATCAGGTCAAATTGGTTGTAACA
GGGAGCTTGTTCCACTTTGAATCGAATAATATATATTTAACAAAAGGAACATCGTCTGAT
TTGTTTTTTCAGAGGCGGTGCCTCGTTTCCTTGCAAATTCAGATGTTGAGACCTTTGTGT
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_19779 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None