barSeed - Barley Seed Development Database

Probe CUST_23922_PI390587928

Source Contig U35_19780

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23922_PI390587928	Hv_44K_v2	TTAAACCGTGATTATGGGGGCAGTTGATATACCGAGACATGAACTTATGCCGCTGAAAGT	572	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250007.1	1031	7e-23	907 - 966	98	59 / 60	plus	ABC12520
JLOC1	JLOC1_44335.1	949	8e-25	738 - 797	100	60 / 60	plus
Harvest21	ABC51261	643	3e-25	573 - 632	100	60 / 60	plus
Harvest35	U35_19780	643	3e-25	573 - 632	100	60 / 60	plus

Contig Sequence (643 bp)

>U35_19780 643 Hv_44K_v2
GTCAATGCACAGCGAACCGGAGCTGCCCAGGAAGCTGTCAACGGTATTCGAAGGGCTAGC
AAGGCCATGACCGAGCAAGAAGCCCGGCAAATATTGGGTATCAGTGAAAAGACGAGTTGG
GAAGAGATCGTGCAGAAGTATGATACGATGTTTGAGAAGAACGCCAAGAGCGGAAGCTTC
TATCTGCAGTCAAAAGTCCACCGAGCGAAAGAATGCCTGGAATCCATATACCATGATAAG
CCGGACATAATGAACTGAGATGGCCTGCGTTTCATCTAACCGATCGATTTGGTCAATGTG
ACCAGAGGTCACCATACCATACTGAGTTCTGCTGGGCGACATCAGGTCAAATTTGGTTGT
AACAGGGAGTTTGATCCACTTTGACTCGAATAATATATATTCAACAAAAGGAACACCGTT
TGATTTGTTTTTTTCCAGAGGCGATGCCTCGTTTCCATGCGAATTTAGATGTTGACCCCT
TTGTGTTGTTGCGATCATCGATAATGTTTGATTGTTGTAGCAGCTTGTGATTGGAACCTG
ATTTCCCTTGTTGCTAGCATTCACCCATAATTTTAAACCGTGATTATGGGGGCAGTTGAT
ATACCGAGACATGAACTTATGCCGCTGAAAGTATGCTGGCTGG

Homology of Contig U35_19780 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None