barSeed - Barley Seed Development Database

Probe CUST_23906_PI390587928

Source Contig U35_19796

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23906_PI390587928	Hv_44K_v2	AAGAATGCTGTAAAAAGTAACAGTGGAAAAATTGTCAAGTTGGATTGGTTGTTTGGTCAG	503	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5927.1	3307	7e-23	2869 - 2928	98	59 / 60	plus	ABC11470
MLOC	MLOC_5927.2	2324	7e-23	211 - 270	98	59 / 60	minus	ABC11470
MLOC	MLOC_5927.3	2823	7e-23	125 - 184	98	59 / 60	minus	ABC11470
JLOC1	JLOC1_3844.2	2939	4e-23	2574 - 2633	98	59 / 60	plus
JLOC1	JLOC1_3844.1	3568	4e-23	3203 - 3262	98	59 / 60	plus
Harvest21	ABC11470	1635	3e-25	1573 - 1632	100	60 / 60	plus	ABC11470
Harvest35	U35_19796	566	3e-25	504 - 563	100	60 / 60	plus

Contig Sequence (566 bp)

>U35_19796 566 Hv_44K_v2
ACATCCGATACAAGTGTTATTCAAGCAGGGTCATGCATGGTTCATGATAAACAAACATAT
TTGCTTCTAGTCAAAATTATTGAGATTTGTGGTGGACGATATGGTGAAGCATCATCGATG
ATAAACAACATGGATTGTGCCTGGTTTATTGAGCTCGCGTCCTCTATTTGTGACAGTCTT
CACCGCAAGATGTTACTTTCTCAGGACACTGAGAAGAACGAGGTGATGGTGTGCCACATG
GATGAGAAAATCGAGGCGGGCATGCAGGAACTCGCCCGGAACGTCCTCCAGTCGGCGCAC
GGCGATGGGGCGAGCAGCGAGACGAAGCAGACCGTATTGAGCGTTGTCAGAAGCTGTTAC
TACGCCGCTAACTGCCCTCTCCATGTTTTGGATGGTCATGTCTTGAAGGTCATTTTCGAA
CATGTGTTTTGAAAGAAAGAAAGAAAGAAGAAATTGTCCTGCAATGGTAGGGATGGATGG
GATATGTATGTATGTACATGGAAAAGAATGCTGTAAAAAGTAACAGTGGAAAAATTGTCA
AGTTGGATTGGTTGTTTGGTCAGGGG

Homology of Contig U35_19796 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None