barSeed - Barley Seed Development Database

Probe CUST_23903_PI390587928

Source Contig U35_19799

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23903_PI390587928	Hv_44K_v2	TGACATTGGAGCATTCACTGAAGGCCTTGTTCATATCTCCCGAGTAAGCGATGGTTTTGT	698	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58105.3	1979	2e-24	594 - 653	100	60 / 60	plus	ABC09936
MLOC	MLOC_58105.1	6608	2e-24	5721 - 5780	100	60 / 60	minus	ABC00642 ABC03659 ABC09936
MLOC	MLOC_58105.2	5572	2e-24	4972 - 5031	100	60 / 60	minus	ABC00642 ABC03659 ABC09936
JLOC1	JLOC1_37720.1	5225	8e-25	779 - 838	100	60 / 60	plus
Harvest21	ABC28182	646	3e-25	584 - 643	100	60 / 60	plus
Harvest35	U35_19799	761	3e-25	699 - 758	100	60 / 60	plus

Contig Sequence (761 bp)

>U35_19799 761 Hv_44K_v2
CACTGCTGTGCCATCAGTCTATCACCTCTGCGCTCTTTCTTCGTTTCGTTTCGTTTCCTT
TCCAGATAAGGCTATATATCCCCAGCGACCCCTCCGCCTCCTCCTCAGCGCTCCCTCTCC
TCACCACGGCCACCGCGGGAGCTCGCCGTCGCCCCGACGAGGGTTCTGAAGGAATCAAGT
TTCCGATACAGCTCCCCTGAATTCAGCATGACGCCGGTGGTTCATTGCTCTGTTGGCACC
ATCAGCCTGTTCCACATAGGCAGCTTCAGGCCCGGCCGAGAAATACAGATAAGAAGGTTC
CGTGGTTCAGAGAGGTATTCAAGAGTCACATCGCAGTCGCGCCATGGGCTGCTGCAGCCA
CAGACACCATTCCACCTGATCAGCATGTACAAAAGAAGCTGGTCCTCTGCCAACAACAGG
CTGAGGACCTTGTCAGCAGCAGCTGTTGAGACTGATGTTGCGGTGGAGGGTTCATCATCT
CCGTCAGGAGAAACTTCCGGCGAAACCTCCGAGGCCGCACCTGCCGCTGCTGAAACCACT
GGGCAGGCTGTGGCTAGCACGACCCCGGCTTCCTCCCCTCCCAAGTTAGGTCGCAACCCA
CGTAAGAGCGAGATGCCGCCGTTGAAGGATGGTGATCTTGTTCCTGGTGTGTCCTTTACC
GGGAAAGTCAGGTCTATCAAGCCATTTGGAGTCTTTGTTGACATTGGAGCATTCACTGAA
GGCCTTGTTCATATCTCCCGAGTAAGCGATGGTTTTGTCGA

Homology of Contig U35_19799 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g35630.3	688	3e-61	protein\|elongation factor TS family protein, expressed
Brachypodium v1_2	Bradi3g05950.1	963	1e-62
Arabidopsis v10	None