barSeed - Barley Seed Development Database

Probe CUST_2388_PI390587928

Source Contig U35_6382

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2388_PI390587928	Hv_44K_v2	AGGCGTGTTTTCATGATCCACGGCTTTAGAACAACTTGTAATGTGTATTTTATTGCCGTT	2057	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360257	1867	2e-24	1781 - 1840	100	60 / 60	plus	ABC13556
MLOC	MLOC_60909.1	1014	2e-24	910 - 969	100	60 / 60	plus	ABC13556
JLOC1	JLOC1_39754.3	2027	8e-25	1953 - 2012	100	60 / 60	plus
JLOC1	JLOC1_39754.2	2079	8e-25	2005 - 2064	100	60 / 60	plus
JLOC1	JLOC1_39754.1	2164	8e-25	2090 - 2149	100	60 / 60	plus
Harvest21	ABC13556	2182	3e-25	2058 - 2117	100	60 / 60	plus	ABC13556
Harvest35	U35_6382	2182	3e-25	2058 - 2117	100	60 / 60	plus

Contig Sequence (2182 bp)

>U35_6382 2182 Hv_44K_v2
TGACATATGGAGGAGAGAGAAGGGGCAGCAATCCCACTACGGTCATCCACAAGACATTCC
TTCCTCTCCCTCTCTTCCGTGTGCTCGAGACGACATCTAGCAGCTGCTCCTCCCCGTCCT
TCCCTCGCCCCTACTTCTCTCCTCCTGTTCATAGCGCGGCCGGCGAGGATTTCCGTCGGC
GAGCACGAGAAGCAATTGGGATCGATCCTTGGATGGATGCAGCCCAGTGGCACCAGGGGC
TAGGGCTCGTGAAGCCCATGGAGGAGATGATCATGGCTGGAAACCCAAATCCTAATCCTA
ATGGGAACCCGAGCCCACAGCCGGCGCCGCCGTCTGGCGCCGAAGCCCAGAGGGCTCCCC
TCCCTGGCCCGCCGGCAGCAGGAGCGGGCGCGGCGGCCGGGACGGGCTCCACCGAGCGGA
AGGCGGCGCGGCCGCAGAAGGAGAAGGCAATCAACTGCCCGAGGTGCAACTCTACCAACA
CCAAGTTCTGCTACTACAACAACTACAGCCTCCAGCAGCCGCGCTACTTCTGCAAGACGT
GCCGCCGCTACTGGACCGAGGGCGGCTCGCTCCGCAACGTGCCCGTCGGCGGCGGCTCAC
GGAAGAACAAGAGATCGTCGTCCTCGGTGGTGTCGTCCGCGGCGGGCGCCGTCTCTACAT
CCGGGGCGGCGTCTGGGACGGTCCCCGTCGGCGGGATGCCGGCCAAGAACCCGAAGCTGA
TGCACGAGGGCGCGCACGACCTCAACCTGGCGTTCCCGCACCACCACGGCCGCGTCTTGC
ACCCGTCCGAGTTCGCGGCGTTCCCTAGCCTGGAGAGCAGCAGCGTCTGCAACCCGGGAG
GCGCCATGGCGGCCAATGGCGTGGGCGGTGGGAGGGGCATGGGCACGTTTTCAGCGATGG
AGCTGCTGAGGAGCACCGGCTGCTACGTACCGCTGCCGCAGGTGCAGCTCGGGATGCCGC
CGGAGTACGCAGCCGCGGGGTTTGCGCTTGGCGAGTTCCGCATGCCCCTGCAGCATCAGC
AGCAACATCACCAGCAGCAGCAGCAGCAGCAGCAACAACATCACCAGCATCAGCATCAGC
ATCAGCAACACCAGCAGCAGCAGCAGCAGCAGCAGGTTCAGAACATGCTCGGGTTCTCGC
TGGACACGGGAGGAGGTGGCGACGGCGGGGGATACGGCGGCGGGTTGCAGGGGGCGCAGG
AGAGCGCAACGGGAAGGATGCTGTTCCCCTTTGAGGACTTGAAGCCGGGGGCTAACGCAG
CTGGAGGTGGTGGTGCAAGTGGCGGTGATCAGTTTGAGCACAGCAAAGAGCAAGGCGGCG
GCGGTGGCCATGAGACCCTGGGGTTCTGGAATAACAGCATGATCGGGAACGGCAGCAGCA
ATGACGCCGGCGGTGGCGGTGGCGGCGGCTCGTGGTAGGATGGCGACAGCATGCATGGCT
CATGCACACGCGGTTGTCAGCATGTGGAGATGATAGGGATAGAGACAAGCGGGTTAATAA
GCGGTGGTGGTGATTAGTGTTACATATGGCGTTTGATCCTTCTTTTGATTGCGTTTGGTT
TTTCTACTGTTCTTGGCCTTCCTTCCTTAATTTCTTGGTGTTTGTTCATGTGTGTGGTGA
CGATCAACTTGGGGGTCTAACACAGCTGAGTACACAGATTAAGTAAGGTGTGTTGAACTA
GTGATTATACGGCTTCTACTATTTATCTTCTGCAACTGAATCTCTCATCTCTGATCACCA
TGACAATTTCATATGAAGTTGTTCATGTAGATGCCCCATTTTTTTTTACCACATGGTTCG
AGTCGAACATCGACTAGATTGGCATTGTCAGACTCTTCTTTTGTCTTTAGGTTTTGCATG
CATGCATCGGACCGTGCAGTATGTGGGTGAATGGATGTTGTGAAGGTTCATTCAATTTCA
GTGCAAGATTGGCATCATCACTTGTCAGTCAGTCAACACTCAACACATTGCTTTACAGTC
AGTTTGACACACTGTGCAGGCTGCAGGATCCTATATCGATCGGTTTGCTGTACTGATTTA
GAGGGCTACCTAGTAGCAGGCGTGTTTTCATGATCCACGGCTTTAGAACAACTTGTAATG
TGTATTTTATTGCCGTTTATATTATATACAAAATACATTAATATATAGACATATTTCCCT
CATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6382 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g45200.1	382	2e-99	protein\|dof zinc finger domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g51510.1	367	8e-85
Arabidopsis v10	None