barSeed - Barley Seed Development Database

Probe CUST_23851_PI390587928

Source Contig U35_42118

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23851_PI390587928	Hv_44K_v2	AAGTCGTGGTGTGTTTGTGTTGCAGCTCTTGCCTGCGTGGGTGGGCATCATGTGGGCGGC	173	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65259.1	1133	6e-24	444 - 502	100	59 / 59	plus	ABC07171
Harvest21	ABC37539	627	3e-25	174 - 233	100	60 / 60	plus
Harvest35	U35_42118	627	3e-25	174 - 233	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_42118 627 Hv_44K_v2
GGCCGGTGCACATGAAGGTCCCGGTGCTCATCCACGACGGCAAATCCATCTGCGAGTCGC
TGGCCATCGTGCAGTACGTCGACGAGGTCTGGGCCGCCACGGGCACCTCCATCCTCCCCG
CCGACCCCTACGACCGCGCCGCCGCTCGCTTCTGGGCCGCCTACGCCGACAGCAAGTCGT
GGTGTGTTTGTGTTGCAGCTCTTGCCTGCGTGGGTGGGCATCATGTGGGCGGCGACGGAG
GAGGAGAGAGCGGAGAAGGTCGGCGACACGCTCGCGGCTATCGGCCAACTGGAGGAGGCG
TTCGGAAAGTGCTCCAACGGAAAGCCCTTCTTCGCCGGCGATTCCGTCGGCTACCTCGAT
CTCGTCGTCGGTTCGCAGTTGCTCTGGTTCGAGGTGCTGCGGAAGATGTTCGGCGTCGTG
GTCATTGAGGCCTGCAGGGCTCCCTTCTTGGCCGCGTGGGTGAAGCGGTTTTGGGAGACT
GATACGGCGAAGGCGGTGGTGCCGGACGTTGGCACGGCGGCGGAGTACCTGAAGAAGCTT
CAGTCTCATCGGGCTGGTGCCACGGTTGCCCAGTTGCTGTCGTGACAAAATCACANAAGT
GCATGTANAAATTGTTGATCCCGGTAG

Homology of Contig U35_42118 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g31860.1	248	3e-67
Arabidopsis v10	None