barSeed - Barley Seed Development Database

Probe CUST_23845_PI390587928

Source Contig U35_30145

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23845_PI390587928	Hv_44K_v2	CGTGGTTTGGATTGCTCAGCTTTGTTCGTTTAAGCATTGCGTGATTCACTGATTAGCAAA	323	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.261	1.162	1.174	1.008	0.375	0.297
Raw	1542.483	2218.131	1985.647	2642.286	348.335	302.525

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12065.3	1941	2e-23	672 - 729	100	58 / 58	plus	ABC00132 ABC00420 ABC00705 ABC00870 ABC29897
MLOC	MLOC_12065.1	1878	2e-23	672 - 729	100	58 / 58	plus	ABC00132 ABC00420 ABC00705 ABC00870 ABC29897
MLOC	MLOC_12065.2	2015	2e-23	672 - 729	100	58 / 58	plus	ABC00132 ABC00420 ABC00705 ABC00870 ABC29897
JLOC1	JLOC1_8062.1	3597	1e-23	3492 - 3549	100	58 / 58	plus
Harvest21	ABC29897	393	3e-25	324 - 383	100	60 / 60	plus	ABC29897
Harvest35	U35_30145	393	3e-25	324 - 383	100	60 / 60	plus

Contig Sequence (393 bp)

>U35_30145 393 Hv_44K_v2
CAATGTTGATCTTGGAACTGCCTGCGGCAAGTACTACCGGGTGTGCTGCCTCAGCATCCT
TGACCCTGGTGACTCGGACATCATCAACACCACCACCACCACCCAGTGAAGAGAAGAGAG
CTCTCTACCTATTTTATTTAGTCGAGTTGTAGGTTCCAGTTGTGCTCTTGAAACCACCAT
TGTTATCTTTGGTTTATGTACTCTTTTGCGACGCTGAGTTGGTGCTGTCATACAGATAAT
CCTTCATATGGTTGTTCTGCTGGACATTCATGTGGTTTTGTTTCCATGATATCGTTGTTT
CCATTATACTTATACTGAATGTGCGTGGTTTGGATTGCTCAGCTTTGTTCGTTTAAGCAT
TGCGTGATTCACTGATTAGCAAAAAAAAAAAAA

Homology of Contig U35_30145 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None