barSeed - Barley Seed Development Database

Probe CUST_23844_PI390587928

Source Contig U35_30146

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23844_PI390587928	Hv_44K_v2	AACGACTGTTATAATGTACCCAGATTTTGTCAGTTACAGTTAGCAGTTACCTTATGTGTT	409	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355603	906	2e-24	721 - 780	100	60 / 60	plus	ABC02461 ABC02462 ABC28922
JLOC1	JLOC1_51292.1	831	8e-25	586 - 645	100	60 / 60	plus
Harvest21	ABC28922	366	3e-25	236 - 295	100	60 / 60	plus	ABC28922
Harvest21	ABC02462	822	3e-25	705 - 764	100	60 / 60	plus	ABC02462
Harvest21	ABC02460	495	3e-25	410 - 469	100	60 / 60	plus
Harvest35	U35_30146	502	3e-25	410 - 469	100	60 / 60	plus
Harvest35	U35_15054	824	3e-25	705 - 764	100	60 / 60	plus

Contig Sequence (502 bp)

>U35_30146 502 Hv_44K_v2
GCGCATCCTCAAGGCCCATGGGCTGGCACCAGAGATCCCGGAGGACCTCTACTTTCTGAT
CAAGAAGGCGGTGGCGATAAGGAAGCACCTGGAGAGGAACAGGAAGGACAAGGACTCTAA
GTTCAGACTCATCCTTGTGGAGAGCAGGATCCACCGCCTCGCTCGCTACTACAAGCGCAC
CAAGAAGCTCCCACCCACCTGGAAGTACGAGTCTACCACCGCCAGCACTCTGGTGGCCTA
AGGGAGATATGCATCTGGTGTGCTCTTAGCTGATTAAAGCTTGATTGTTCCAGAAACCAT
TCTTATGTAACGCTTTATGAGAGTTTGGAGCCAAGTCGATGCTGCAAATTTTCTATGTTT
GACTGGAGGATGCTGTAAAACCTTTGTTGTTTCACTGTTCTGTCTGTTAAACGACTGTTA
TAATGTACCCAGATTTTGTCAGTTACAGTTAGCAGTTACCTTATGTGTTTTCNNAANAAA
AAACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_30146 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None