barSeed - Barley Seed Development Database

Probe CUST_23842_PI390587928

Source Contig U35_30148

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23842_PI390587928	Hv_44K_v2	ATGCAATGGAAGCACTTCACCACACTCTGCTTATGAAGGAAAGGAGAAGCAACGATGAGT	524	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39563.1	1073	2e-24	301 - 360	100	60 / 60	plus	ABC11159 ABC12627
JLOC1	JLOC1_25802.2	1094	8e-25	296 - 355	100	60 / 60	plus
JLOC1	JLOC1_25802.1	1189	8e-25	296 - 355	100	60 / 60	plus
Harvest21	ABC29900	590	3e-25	525 - 584	100	60 / 60	plus
Harvest35	U35_30148	590	3e-25	525 - 584	100	60 / 60	plus

Contig Sequence (590 bp)

>U35_30148 590 Hv_44K_v2
GCTTGACAAGGTGATGGAAGAAAAGGAGCTGGTCCTCCAGAGATACAATGAGGAAATCCG
CAAAATGCAGCAACTTGCTCGTACGCATTCTCAGATGATCATCAATGAGAACCAGAAGCT
CCGTTCGGAACTGGAGGCCAAGATGCAGGATCTTGAATTCAAATCCAGGCAGCTTGATGA
GCTTGCTGTGCGTAGTGACTCGGATAGAAGGAACCTTGAGAAAGAGAAGGAGAAGAATGA
GATGAAAGCAAAATATCTTAAGATGGCAGCGTCCGAGCAACAGAGGTCAGATGAAAACGT
GCTGAAGCTTGTAGCAAAACACAAGAGGGAGAAAAAAGCTGCTCTAGATGAGATTATCAA
GTTAGAGCAGAAACTGGATGCCAAGCAGAAGCTTGAGCTAGAAATAAAACAGTTGCAGGG
AAAATTGGAAGTGATGAAGCATATGCCAGGTGTGGAAGACTCTGAATCAAAGAGGAAAAT
AGATGAACTTAGTGTCGAGCTTCAGGACAAGTATGGTGAAATGGATGCAATGGAAGCACT
TCACCACACTCTGCTTATGAAGGAAAGGAGAAGCAACGATGAGTTGCAAG

Homology of Contig U35_30148 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03570.1	561	2e-77	protein\|transcription factor X1, putative, expressed
Brachypodium v1_2	Bradi2g43557.1	518	7e-99
Arabidopsis v10	None