barSeed - Barley Seed Development Database

Probe CUST_23576_PI390587928

Source Contig U35_41974

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23576_PI390587928	Hv_44K_v2	GTCAGATCATCATCATCATCATGGTTGATTCAGTGGATTAAGAGTGAATAATCCATTTTC	218	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63331.3	2381	2e-24	245 - 304	100	60 / 60	plus	ABC05553 ABC05554 ABC37826
JLOC1	JLOC1_41466.2	5383	8e-25	2658 - 2717	100	60 / 60	plus
Harvest21	ABC05552	845	3e-25	219 - 278	100	60 / 60	plus
Harvest35	U35_41974	687	3e-25	219 - 278	100	60 / 60	plus
Harvest35	U35_30564	706	3e-25	80 - 139	100	60 / 60	plus

Contig Sequence (687 bp)

>U35_41974 687 Hv_44K_v2
AAAATGTGTAGACAACTCGGGCGGCTGTCAGAGGCATCTTCCACAGTGACGCAGTGGCAT
GTGCTGTGTGCATTGTATAGTACGTACTATTAGTATAGTTGAACAGTGCAGTGGTATTTT
TACTGTTTGCGCCCGGCCATGCACGTGAGTTTATTCGGTCTCGCCATTATTAATTCCGGC
CGGCAAAAAGGAGAGAACAAAACTGCACTGTTCCGATCGTCAGATCATCATCATCATCAT
GGTTGATTCAGTGGATTAAGAGTGAATAATCCATTTTCTAAGAGTAATTTTGATATGATG
GATGGATGAAGGTGTTCGTGGTGGGTCACGACTGGGGCGCCATCATCGCGTGGTACCTGT
GCCTCTTCCGGCCGGACCGGGTGACGGCGCTCGTCAACACCAGCGTCGCCTTCATGCGCC
ACGTCTTCATCCGCGCCGGCGCCGGCGCCGTCAAGACCACCGACTACTTCAACCAAGCCT
ACGGCCCGACCTACTACATCTGCCGCTTCCAGGTCTCCTCCTCCGCTCCTCTGTCTATAC
TACCGACTCCGACGACGTCTGGACTAACCATCGACGACGGCGACGACGACGTGGTGCAGG
AGCCCGGGGTGGCGGAGAAGGAGTTCGCGCCGGCGCACGCGAGGCACCTCATGACGCGCA
TCCTGAGCGACCGCTTCAGCGAGCGCG

Homology of Contig U35_41974 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None