barSeed - Barley Seed Development Database

Probe CUST_23539_PI390587928

Source Contig U35_36972

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23539_PI390587928	Hv_44K_v2	ATAAAGAGAATAGGCCGTGTCCGAATAAACGGGTTGTAATGAGTTGTAAATGAATGAAAC	460	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62667.4	1878	2e-24	1749 - 1808	100	60 / 60	plus	ABC04989 ABC04991 ABC04992
MLOC	MLOC_62667.5	1604	2e-24	1240 - 1299	100	60 / 60	plus	ABC04989 ABC04991 ABC04992
MLOC	MLOC_62667.3	2303	2e-24	1939 - 1998	100	60 / 60	plus	ABC04989 ABC04991 ABC04992
MLOC	MLOC_62667.1	2361	2e-24	1974 - 2033	100	60 / 60	plus	ABC04989 ABC04991 ABC04992
Harvest21	ABC04992	2151	3e-25	1820 - 1879	100	60 / 60	plus	ABC04992
Harvest21	ABC04991	575	3e-25	88 - 147	100	60 / 60	minus	ABC04991
Harvest21	ABC04989	607	3e-25	88 - 147	100	60 / 60	minus	ABC04989
Harvest35	U35_36972	520	3e-25	461 - 520	100	60 / 60	plus
Harvest35	U35_34131	690	3e-25	69 - 128	100	60 / 60	minus
Harvest35	U35_1455	2151	3e-25	1820 - 1879	100	60 / 60	plus

Contig Sequence (520 bp)

>U35_36972 520 Hv_44K_v2
GGTTTCCGAAGCTCTTGAGTACGGGCTTGTCGGTGTGAATGAGGGATTGATTTCCACAGA
GGTGGCGCCATTCGGTGGGGTTAAGCAGTCTGGCCTTGGGCGGGAAGGATCAAAATATGG
CATGGATGACTTCCTGGAGGCTGGCACACACAACTCTCTAAACCGTTTCCCGACTTTAAT
CGATGCTCATTTGCTTGACCGTGGTTGCAGATTAAGTATGTATGCATGGGCAACCTGGGT
TGATGCTTGAAGTTGGCCTTCGCTTCCACCTGAATGAAGAAGGATCGAGAACCTACCGGG
GCCAAGTACGCTGATAAGCGCGGATAGCTCTGCAGGCGTAAGGTGTAAGATGGAACGAAG
AGGGAGGACAGTNNTAGAAGCTTGGAATAAAGGGAGTAGGCCGTGTCCTAATAAAAGGTA
TAAGTTCGAGTGAAGAGGGAACACAGTTTAGAAGCTTGGAATAAAGAGAATAGGCCGTGT
CCGAATAAACGGGTTGTAATGAGTTGTAAATGAATGAAAC

Homology of Contig U35_36972 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None